Todd, Try MacPyMOL for the full PYMOL effect. http://delsci.com/macpymol
There is also a new command in the 0.95 series: split_states object-name which will spread a PDB "biological unit" (or any multi-state object -- including SD files) over a series of independent objects. This makes it possible to interact with such objects more naturally than with "all_states = 1". load 1c8e.pdb1, 1c8e split_states 1c8e delete 1c8e zoom spectrum b hide lines set cartoon_sampling,3 show cartoon bg_color grey70 set hash_max, 150 ray ... orient zoom complete=1 ray image & screen-shot at: http://delsci.com/img/1c8e.jpg http://delsci.com/img/1c8e-screen.jpg Note that looking at large systems such as this (255300 atoms) may take some extra RAM -- 1.5 GB is recommended for this task, and it still takes a dual 2 Ghz G5 85 seconds to render... Cheers, Warren > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > Todd Geders > Sent: Friday, April 02, 2004 10:28 AM > To: Ann Mullin > Cc: pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] biological unit question > > Command line equivalent is the following: > > set all_states,1 > > On Fri, 2004-04-02 at 11:38, Ann Mullin wrote: > > Hello, > > > > I am also interested in being able to display an entire > virus capsid. > > > > Ny new question regards Todd's reply to check Movie->Show > All States. > > > > I run Native PyMOL for MacOSX on a G5, and I have never been able > > toaccess the preferences for PyMOL, the option is greyed out on the > > filemenu. So I am not sure where or how to get the show all states > > option. > > > > Thanks for the help this list has provided. > > > > Ann > > > > > > Ann Mullin > > Research Scientist > > Cell and Molecular Biology Dept. > > Tulane University > > New Orleans, LA 70118-5698 > > 504-865-6742 (Ph) > > 504-865-6785 (FAX) > > amul...@tulane.edu > > > > ------------------------------------------------------- > This SF.Net email is sponsored by: IBM Linux Tutorials Free > Linux tutorial presented by Daniel Robbins, President and CEO > of GenToo technologies. Learn everything from fundamentals to > system > administration.http://ads.osdn.com/?ad_id=1470&alloc_id=3638&op=click > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
