07, 2013 2:38 PM
To: Noinaj, Nicholas (NIH/NIDDK) [F]
Cc: Gianluigi Caltabiano; James Starlight; pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] Cartoon transparency
I must say, 'cartoon skip' does not do what I thought it would do.
fetch 1RV1
cartoon skip, i. 55
# now a helix
I must say, 'cartoon skip' does not do what I thought it would do.
fetch 1RV1
cartoon skip, i. 55
# now a helix section is turned into a loop
cartoon skip, i. 56
# now there is a break, but two non-helix ends
cartoon skip, i. 57
# now there is a break, with two non-helix ends
I guess I understan
eforge.net
Subject: Re: [PyMOL] Cartoon transparency
You need to create a new object of the part you want transparent and then set
that cartoon as transparent (and hide the "original" cartoon for the selection).
G.
Da: James Starlight
A: pymol-users
Invia
t;original" cartoon for the
> selection).
>
> G.
>
> --
> *Da:* James Starlight
> *A:* pymol-users
> *Inviato:* Giovedì 6 Giugno 2013 12:36
> *Oggetto:* [PyMOL] Cartoon transparency
>
> Dear PyMol users!
>
>
> I want t
to: [PyMOL] Cartoon transparency
Dear PyMol users!
I want to set transparency on the selected
carton region of my protein ( I have closed GFP barell with the
chromophore inside it so I'd like set transparency of some beta-shits to
make chromophore easily visible ).
In PyMol I
Dear PyMol users!
I want to set transparency on the selected carton region of my protein ( I
have closed GFP barell with the chromophore inside it so I'd like set
transparency of some beta-shits to make chromophore easily visible ).
In PyMol I've selected region corresponded to that Beta-sheets
Original Message-
> From: pymol-users-ad...@lists.sourceforge.net
> [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of Paul Wan
> Sent: Friday, February 20, 2004 7:37 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] Cartoon Transparency AND Transparent Mes
Hi
Just got my hands on Pymol G5 version and having loadsa fun with it.
I'm trying to make a diagram and wondered if it is possible to make the
cartoon transparent then put a mesh over the whole thing (also made
transparent).
Currently I can make th ecartoon transparent but as soon as I add a mesh
[i'm sending again; it seems the pymol sourceforge list was down when i
tried to send this]
Hi All-
In reference to this post:
http://sourceforge.net/mailarchive/message.php?msg_id=6977122
When I gave PyMOL this command, I got the following error:
Error: unknown setting 'cartoon_transparency'.
Hi All-
In reference to this post:
http://sourceforge.net/mailarchive/message.php?msg_id=6977122
When I gave PyMOL this command, I got the following error:
Error: unknown setting 'cartoon_transparency'.
Is this setting only available on newer versions of PyMOL? If so,
anyone working on a *new
[trying a third time]
Hi All-
In reference to this post:
http://sourceforge.net/mailarchive/message.php?msg_id=6977122
When I gave PyMOL this command, I got the following error:
Error: unknown setting 'cartoon_transparency'.
Is this setting only available on newer versions of PyMOL? If so,
a
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