Not sure if u have solved this yet, but see 'cartoon skip', i think that is what u r looking for.
Cheers Nick ________________________________________ From: Gianluigi Caltabiano [chimic...@yahoo.it] Sent: Thursday, June 06, 2013 7:50 To: James Starlight; pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] Cartoon transparency You need to create a new object of the part you want transparent and then set that cartoon as transparent (and hide the "original" cartoon for the selection). G. ________________________________ Da: James Starlight <jmsstarli...@gmail.com> A: pymol-users <pymol-users@lists.sourceforge.net> Inviato: Giovedì 6 Giugno 2013 12:36 Oggetto: [PyMOL] Cartoon transparency Dear PyMol users! I want to set transparency on the selected carton region of my protein ( I have closed GFP barell with the chromophore inside it so I'd like set transparency of some beta-shits to make chromophore easily visible ). In PyMol I've selected region corresponded to that Beta-sheets and than used set cartoon_transparency, 0.5, sele unfortunatelly there were no any changes after this :( How I could solve it ? Thanks for help, James ------------------------------------------------------------------------------ How ServiceNow helps IT people transform IT departments: 1. A cloud service to automate IT design, transition and operations 2. Dashboards that offer high-level views of enterprise services 3. A single system of record for all IT processes http://p.sf.net/sfu/servicenow-d2d-j _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net<mailto:PyMOL-users@lists.sourceforge.net>) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net ------------------------------------------------------------------------------ How ServiceNow helps IT people transform IT departments: 1. A cloud service to automate IT design, transition and operations 2. Dashboards that offer high-level views of enterprise services 3. A single system of record for all IT processes http://p.sf.net/sfu/servicenow-d2d-j _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
