That would not work if you were trying to show selected individual ribbon
segments translucent, I think. Right?
>From what I can tell, here is the list of settings that you can assign a
selection. Notably missing is cartoon_transparency and ribbon_transparency.
Perhaps because a cartoon object can't be broken down into individual
segments that way in PyMOL. Are there more?
cartoon_color
dot_color
ellipsoid_color
ellipsoid_scale
ellipsoid_transparency
label_color
label_position
ladder_color
ladder_mode
ladder_radius
mesh_color
nonbonded_transparency
ribbon_color
ring_color
ring_mode
ring_radius
ring_width
sphere_color
sphere_scale
sphere_transparency
surface_color
transparency
On Thu, Jun 6, 2013 at 6:50 AM, Gianluigi Caltabiano <chimic...@yahoo.it>wrote:
> You need to create a new object of the part you want transparent and then
> set that cartoon as transparent (and hide the "original" cartoon for the
> selection).
>
> G.
>
> ------------------------------
> *Da:* James Starlight <jmsstarli...@gmail.com>
> *A:* pymol-users <pymol-users@lists.sourceforge.net>
> *Inviato:* Giovedì 6 Giugno 2013 12:36
> *Oggetto:* [PyMOL] Cartoon transparency
>
> Dear PyMol users!
>
>
> I want to set transparency on the selected carton region of my protein ( I
> have closed GFP barell with the chromophore inside it so I'd like set
> transparency of some beta-shits to make chromophore easily visible ).
>
>
> In PyMol I've selected region corresponded to that Beta-sheets and than
> used
>
> set cartoon_transparency, 0.5, sele
>
>
>
> unfortunatelly there were no any changes after this :(
>
> How I could solve it ?
>
>
>
> Thanks for help,
>
>
> James
>
>
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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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