Re: [PyMOL] Pymol and load_traj

2013-07-14 Thread Thomas Holder
Hi David, there are no such issues known for load_traj. What kind of trajectory format are you trying to load? Can you send me your input files (off-list), so I can try to reproduce and debug it? Cheers, Thomas David Osguthorpe wrote, On 07/14/13 23:01: > Im wondering if this is the appropriat

[PyMOL] Pymol and load_traj

2013-07-14 Thread David Osguthorpe
Im wondering if this is the appropriate place for talking about pymol bugs/development - I could not find a pymol development mailing list. I was attempting to use load_traj for a trajectory and got an instant crash - this was on my OSX development version (Ive downloaded the pymol svn source wi

Re: [PyMOL] Pymol Library Script: findSurfaceResidues

2013-07-14 Thread M Adanan
Many thanks Thomas Sent from my iPad On 14 Jul 2013, at 21:07, Thomas Holder wrote: > Hi Muhtari, > > I uploaded the script to the Pymol-script-repo, so you can use the > download link in the upper right box now, instead of copy&paste: > > http://pymolwiki.org/index.php/FindSurfaceResidues >

Re: [PyMOL] Creating coloured and transparent polyhedra

2013-07-14 Thread Schubert, Carsten [JRDUS]
Hi Timo, That is best approached with CGO objects. You can find some examples in \PyMOL\PyMOL\modules\pymol\cgo.py Here is a bit of a write-up I attempted a while ago. BTW transparency of CGO objects can be controlled via the "setting cgo_transparency" HTH Carsten --

Re: [PyMOL] Pymol Library Script: findSurfaceResidues

2013-07-14 Thread Thomas Holder
Hi Muhtari, I uploaded the script to the Pymol-script-repo, so you can use the download link in the upper right box now, instead of copy&paste: http://pymolwiki.org/index.php/FindSurfaceResidues Cheers, Thomas M Adanan wrote, On 07/14/13 15:00: > Hi David, > > Which character? > > I did a c

Re: [PyMOL] Pymol Library Script: findSurfaceResidues

2013-07-14 Thread M Adanan
Hi David, Which character? I did a copy and paste, from Pymol's Script Library, into Mac's Text Editor, and saved it as a txt file. Many thanks, M.A. Sent from my iPad On 13 Jul 2013, at 17:26, David Hall wrote: > your file has a weird non-ASCII character on line 5, causing the syntax erro