Many thanks Thomas Sent from my iPad
On 14 Jul 2013, at 21:07, Thomas Holder <thomas.hol...@schrodinger.com> wrote: > Hi Muhtari, > > I uploaded the script to the Pymol-script-repo, so you can use the > download link in the upper right box now, instead of copy&paste: > > http://pymolwiki.org/index.php/FindSurfaceResidues > > Cheers, > Thomas > > M Adanan wrote, On 07/14/13 15:00: >> Hi David, >> >> Which character? >> >> I did a copy and paste, from Pymol's Script Library, into Mac's Text >> Editor, and saved it as a txt file. >> >> Many thanks, >> >> M.A. >> >> Sent from my iPad >> >> On 13 Jul 2013, at 17:26, David Hall <li...@cowsandmilk.net >> <mailto:li...@cowsandmilk.net>> wrote: >> >>> your file has a weird non-ASCII character on line 5, causing the >>> syntax error it mentions on line 5. Actually, your file has such >>> characters on a whole bunch of lines (5, 37, 40, 45, 53, 54, 59, 61, >>> 63, 64). Not sure how they were added, but if you delete them, then >>> your file runs. If you provide more details on how you made your file, >>> people may be able to tell you how to avoid the problem. >>> >>> -David >>> >>> On Saturday, July 13, 2013 at 9:31 AM, Muhtari Adanan wrote: >>>> >>>>> Dear Group, >>>>> >>>>> I am a complete novice, thus hoped you would provide guidance on >>>>> using Pymol Scripts. >>>>> >>>>> When trying to run the above script, from Pymol's Script Library, on >>>>> my macpymol, i get the following error message - attached below is >>>>> the findSurfaceResidues.txt script. >>>>> >>>>> PyMOL>run findSurfaceResidues3 >>>>> Traceback (most recent call last): >>>>> File >>>>> "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parser.py", >>>>> line 338, in parse >>>>> File >>>>> "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parsing.py", >>>>> line 455, in run_file >>>>> IOError: [Errno 2] No such file or directory: 'findSurfaceResidues3' >>>>> PyMOL>run findSurfaceResidues3.txt >>>>> Traceback (most recent call last): >>>>> File >>>>> "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parser.py", >>>>> line 338, in parse >>>>> File >>>>> "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parsing.py", >>>>> line 455, in run_file >>>>> File "findSurfaceResidues3.txt", line 5 >>>>> >>>>> ^ >>>>> SyntaxError: invalid syntax >>>>> >>>> >>>>> Where am I, going astray? >>>>> >>>>> M.A. > > -- > Thomas Holder > PyMOL Developer > Schrödinger Contractor > > ------------------------------------------------------------------------------ > See everything from the browser to the database with AppDynamics > Get end-to-end visibility with application monitoring from AppDynamics > Isolate bottlenecks and diagnose root cause in seconds. > Start your free trial of AppDynamics Pro today! > http://pubads.g.doubleclick.net/gampad/clk?id=48808831&iu=/4140/ostg.clktrk > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net ------------------------------------------------------------------------------ See everything from the browser to the database with AppDynamics Get end-to-end visibility with application monitoring from AppDynamics Isolate bottlenecks and diagnose root cause in seconds. Start your free trial of AppDynamics Pro today! http://pubads.g.doubleclick.net/gampad/clk?id=48808831&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
