Hi David,
Which character?
I did a copy and paste, from Pymol's Script Library, into Mac's Text Editor,
and saved it as a txt file.
Many thanks,
M.A.
Sent from my iPad
On 13 Jul 2013, at 17:26, David Hall <li...@cowsandmilk.net> wrote:
> your file has a weird non-ASCII character on line 5, causing the syntax error
> it mentions on line 5. Actually, your file has such characters on a whole
> bunch of lines (5, 37, 40, 45, 53, 54, 59, 61, 63, 64). Not sure how they
> were added, but if you delete them, then your file runs. If you provide more
> details on how you made your file, people may be able to tell you how to
> avoid the problem.
>
> -David
>
> On Saturday, July 13, 2013 at 9:31 AM, Muhtari Adanan wrote:
>
>>
>>
>>> Dear Group,
>>>
>>> I am a complete novice, thus hoped you would provide guidance on using
>>> Pymol Scripts.
>>>
>>> When trying to run the above script, from Pymol's Script Library, on my
>>> macpymol, i get the following error message - attached below is the
>>> findSurfaceResidues.txt script.
>>>
>>> PyMOL>run findSurfaceResidues3
>>> Traceback (most recent call last):
>>> File
>>> "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parser.py",
>>> line 338, in parse
>>> File
>>> "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parsing.py",
>>> line 455, in run_file
>>> IOError: [Errno 2] No such file or directory: 'findSurfaceResidues3'
>>> PyMOL>run findSurfaceResidues3.txt
>>> Traceback (most recent call last):
>>> File
>>> "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parser.py",
>>> line 338, in parse
>>> File
>>> "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parsing.py",
>>> line 455, in run_file
>>> File "findSurfaceResidues3.txt", line 5
>>>
>>> ^
>>> SyntaxError: invalid syntax
>>
>>
>>> Where am I, going astray?
>>>
>>> M.A.
>>
>> ------------------------------------------------------------------------------
>> See everything from the browser to the database with AppDynamics
>> Get end-to-end visibility with application monitoring from AppDynamics
>> Isolate bottlenecks and diagnose root cause in seconds.
>> Start your free trial of AppDynamics Pro today!
>> http://pubads.g.doubleclick.net/gampad/clk?id=48808831&iu=/4140/ostg.clktrk
>> _______________________________________________
>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>>
>> Attachments:
>> - findSurfaceResidues3.txt
>
------------------------------------------------------------------------------
See everything from the browser to the database with AppDynamics
Get end-to-end visibility with application monitoring from AppDynamics
Isolate bottlenecks and diagnose root cause in seconds.
Start your free trial of AppDynamics Pro today!
http://pubads.g.doubleclick.net/gampad/clk?id=48808831&iu=/4140/ostg.clktrk
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
