Hi Muhtari, I uploaded the script to the Pymol-script-repo, so you can use the download link in the upper right box now, instead of copy&paste:
http://pymolwiki.org/index.php/FindSurfaceResidues Cheers, Thomas M Adanan wrote, On 07/14/13 15:00: > Hi David, > > Which character? > > I did a copy and paste, from Pymol's Script Library, into Mac's Text > Editor, and saved it as a txt file. > > Many thanks, > > M.A. > > Sent from my iPad > > On 13 Jul 2013, at 17:26, David Hall <li...@cowsandmilk.net > <mailto:li...@cowsandmilk.net>> wrote: > >> your file has a weird non-ASCII character on line 5, causing the >> syntax error it mentions on line 5. Actually, your file has such >> characters on a whole bunch of lines (5, 37, 40, 45, 53, 54, 59, 61, >> 63, 64). Not sure how they were added, but if you delete them, then >> your file runs. If you provide more details on how you made your file, >> people may be able to tell you how to avoid the problem. >> >> -David >> >> On Saturday, July 13, 2013 at 9:31 AM, Muhtari Adanan wrote: >>> >>>> Dear Group, >>>> >>>> I am a complete novice, thus hoped you would provide guidance on >>>> using Pymol Scripts. >>>> >>>> When trying to run the above script, from Pymol's Script Library, on >>>> my macpymol, i get the following error message - attached below is >>>> the findSurfaceResidues.txt script. >>>> >>>> PyMOL>run findSurfaceResidues3 >>>> Traceback (most recent call last): >>>> File >>>> "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parser.py", >>>> line 338, in parse >>>> File >>>> "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parsing.py", >>>> line 455, in run_file >>>> IOError: [Errno 2] No such file or directory: 'findSurfaceResidues3' >>>> PyMOL>run findSurfaceResidues3.txt >>>> Traceback (most recent call last): >>>> File >>>> "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parser.py", >>>> line 338, in parse >>>> File >>>> "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parsing.py", >>>> line 455, in run_file >>>> File "findSurfaceResidues3.txt", line 5 >>>> >>>> ^ >>>> SyntaxError: invalid syntax >>>> >>> >>>> Where am I, going astray? >>>> >>>> M.A. -- Thomas Holder PyMOL Developer Schrödinger Contractor ------------------------------------------------------------------------------ See everything from the browser to the database with AppDynamics Get end-to-end visibility with application monitoring from AppDynamics Isolate bottlenecks and diagnose root cause in seconds. Start your free trial of AppDynamics Pro today! http://pubads.g.doubleclick.net/gampad/clk?id=48808831&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
