Re: [Freesurfer] nu_correct error

Please sent the log file On 12/15/2021 7:28 AM, xuan wrote: External Email - Use Caution Dear FreeSurfer Experts, I am attempting to recon-all for my one subject for testing on my lab server. However, I get following error: ncopen: filename "./tmp.mri_nu_correct.mni.13492/nu1.mnc":

[Freesurfer] nu_correct error

External Email - Use Caution Dear FreeSurfer Experts, I am attempting to recon-all for my one subject for testing on my lab server. However, I get following error:  ncopen: filename "./tmp.mri_nu_correct.mni.13492/nu1.mnc": Not a netCDF file miopen: MINC package entry point Err

Re: [Freesurfer] nu_correct error {Disarmed}

Douglas N. Greve Sent: Thursday, July 23, 2020 10:31 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] nu_correct error {Disarmed} CAUTION: External Sender what version of freesurfer are you running? On 7/17/2020 2:24 PM, Bahrani, Ahmed A. wrote: External Email - Use

Re: [Freesurfer] nu_correct error {Disarmed}

*From:* freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve *Sent:* Friday, July 17, 2020 10:12 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] nu_correct error CAUTION: External Sender What version are you running? Can you send the recon-all.log file? On

Re: [Freesurfer] nu_correct error {Disarmed}

: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] nu_correct error CAUTION: External Sender What version are you running? Can you send the recon-all.log file? On 7/16/2020 3:40 PM, Bahrani, Ahmed A. wrote: External Email - Use Caution Hello Freesurfer experts, I have a question related

Re: [Freesurfer] nu_correct error

What version are you running? Can you send the recon-all.log file? On 7/16/2020 3:40 PM, Bahrani, Ahmed A. wrote: External Email - Use Caution Hello Freesurfer experts, I have a question related to the singularity container to run a bash script that contains a freesurfer's commend "n

[Freesurfer] nu_correct error

External Email - Use Caution Hello Freesurfer experts, I have a question related to the singularity container to run a bash script that contains a freesurfer's commend "nu_correct". The singularity container only runs as a root user login and gives error as shown below with a g

[Freesurfer] nu_correct error

External Email - Use Caution Hello Dear FreeSurfer Developers, I'm attempting to run some of data with recon-all code, and after some success run on several data, now I get the following error message even when I run those data that ran well before: nu_evaluate: crashed while runn

[Freesurfer] nu_correct ERROR (FreeSurfer v6)

External Email - Use Caution Dear FreeSurfer Developers, I have the most recent version of FreeSurfer installed on a MacOS Mojave (10.14) and as I was running recon-all, I received the following error message: "Assertion failed at line 742 in file templates/CachedArray.cc nu_esti

[Freesurfer] nu_correct error (FS 6 beta)

Dear all, I'd be very grateful for a bit of help with the following problem. I'm running FreeSurfer 6.0 (I read a suggestion that there had been some compatibility issues running the current stable FS release with newer versions of openSUSE) on a cluster. However, nu_correct seems to be hitting

[Freesurfer] nu_correct error

Hello, Freesurfers, I got an error message when I trying to use recon-all function in freesurfer on the Mandriva 2008 system installed on a Linux Dell precision T3500 Machine. I was unable to find an answer in the mailing list. my SUBJECTS_DIR is : /neurospin/grip/protocols/MRI/childrenNS5_7y_Mon

[Freesurfer] Nu_correct error

Hi all, I've been consistently getting a couple of different errors early on during -autorecon1: .ncvarput: ncid 4: Bad file descriptor mivarput1: MINC package entry point sharpen_volume: crashed while running minclookup (termination status=768) nu_estimate_np_and_em: crashed while runni

Re: [Freesurfer] nu_correct error

Thomas, >From looking at the log, this appears to be v3.0.2, which is an old version. Is this the first time this has been used? That is, has this version been used on other scans and it is just now failing on this one (and the others in the set)? Can you get a more recent version? The current

[Freesurfer] nu_correct error

Hi, I am trying to run an MPRRAGE scan through the first step of autorecon-all, but get the following error message: Iteration 1 Thu Feb 21 14:57:06 PST 2008 nu_correct -clobber ./tmp.mri_nu_correct.mni.28541/nu0.mnc ./tmp.mri_nu_correct.mni.28541/nu1.mnc spawn: exec of nu_estim

Re: [Freesurfer] Nu_correct error

is this a new installation, or existing installation? is this the first time nu_correct has run, or has it run in prior instances? does the error repeat when re-run? which linux distribution is in use (date)? On Wed, 2006-04-05 at 15:24 -0400, Frederick Powell wrote: > Hello I am a Grad student

[Freesurfer] Nu_correct error

Hello I am a Grad student with Dr. Killiany at Boston University. I am running auto recon with a Linux Centos machine. So I am running the auto recon on his system while controlling from my mac machine. I recieved the following error. I am not Linux savy so will need some detailed help. Thanks