Hello, Freesurfers,
I got an error message when I trying to use recon-all function in
freesurfer
on the Mandriva 2008 system installed on a Linux Dell precision T3500
Machine.
I was unable to find an answer in the mailing list.
my SUBJECTS_DIR is :
/neurospin/grip/protocols/MRI/childrenNS5_7y_Monzalvo_2012/Subject/
(from the "neurospin/grip" network in my lab).
I am using the 5.1 version of freesurfer.
An the command line I ran was the following :
recon-all -s ab080228 -all
This is error message I received :
Iteration 1 jeu fév 9 10:53:09 CET 2012
nu_correct -clobber ./tmp.mri_nu_correct.mni.3269/nu0.mnc
./tmp.mri_nu_correct.mni.3269/nu1.mnc -tmpdir
./tmp.mri_nu_correct.mni.3269/0/
nu_correct: Command not found.
ERROR: nu_correct
Linux is145054 2.6.22.19-server-2mdv #1 SMP Mon May 5 21:13:00 EDT
2008 i686 Intel(R) Xeon(R) CPU E5540 @ 2.53GHz GNU/Linux
recon-all -s ab080228 exited with ERRORS at jeu fév 9 10:53:09 CET 2012
For more details, see the log file
/neurospin/grip/protocols/MRI/childrenNS5_7y_Monzalvo_2012/subtry/ab080228/scripts/recon-all.log
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Thank you for your help,
Karla Monzalvo
--
Karla Monzalvo
Inserm U.992 - Neuroimagerie Cognitive
CEA/SAC/DSV/I2BM/NeuroSpin
Bât 145, Point Courrier 156
F-91191 GIF/YVETTE, FRANCE
Tél : 33 (0)1 69 08 90 66
Fax : 33 (0)1 69 08 79 73
karla.monza...@cea.fr
http://www.unicog.org/
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