What version are you running? Can you send the recon-all.log file?
On 7/16/2020 3:40 PM, Bahrani, Ahmed A. wrote:
External Email - Use Caution
Hello Freesurfer experts,
I have a question related to the singularity container to run a bash
script that contains a freesurfer's commend "nu_correct".
The singularity container only runs as a root user login and gives
error as shown below with a general user login.
==================================================================================
---Error message---
evaluate_field: posixio.c:210: px_pgin: Assertion `*posp ==
((off_t)(-1)) || *posp == lseek(nciop->fd, 0, 1)' failed.
nu_evaluate: crashed while running evaluate_field (termination status=134)
nu_correct: crashed while running nu_evaluate (termination status=65280)
--------------------------------------------------------------------
---Error message---
ncvarput: ncid 4: No space left on device
mivarput1: MINC package entry point
nu_evaluate: crashed while running minccalc (termination status=768)
nu_correct: crashed while running nu_evaluate (termination status=768)
--------------------------------------------------------------------
Would you advise, please?
Thanks,
Ahmed
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
