Re: [Freesurfer] mris_label2annot & CLUT error

2015-09-10 Thread Sam Zorowitz
Instead of using an echo this time, I inputted the direct paths straight into the command line. I am in the tcsh shell. On Thu, Sep 10, 2015 at 10:25 AM, Bruce Fischl wrote: > did you try putting an echo in front to see how it expands? What shell are > you using? > > On Thu, 10 Sep 2015, Sam Zor

Re: [Freesurfer] mris_label2annot & CLUT error

2015-09-10 Thread Bruce Fischl
did you try putting an echo in front to see how it expands? What shell are you using? On Thu, 10 Sep 2015, Sam Zorowitz wrote: Hi Bruce, Thank you for the reply. I had been running it through python. After running the command from the command line, however, I am still receiving the same error.

Re: [Freesurfer] mris_label2annot & CLUT error

2015-09-10 Thread Sam Zorowitz
Hi Bruce, Thank you for the reply. I had been running it through python. After running the command from the command line, however, I am still receiving the same error. Best, Sam On Thu, Sep 10, 2015 at 9:00 AM, Bruce Fischl wrote: > Hi Sam > > are you running this from a unix/linux command lin

Re: [Freesurfer] mris_label2annot & CLUT error

2015-09-10 Thread Bruce Fischl
Hi Sam are you running this from a unix/linux command line? The >> usually means matlab. In any case, it looks like $CTAB is not being expanded by the shell. Try using echo to see what the actual command is. cheers Bruce On Thu, 10 Sep 2015, Sam Zorowitz wrote: > Hi all, > > I am trying to

[Freesurfer] mris_label2annot & CLUT error

2015-09-09 Thread Sam Zorowitz
Hi all, I am trying to make a custom annotation file. In doing so, I have created a custom color lookup table. I have attached the CLUT. I run the following command: >> mris_label2annot --subject $SUBJ --hemi $HEMI --ctab $CTAB --a $OUT --l label_1 --l label_2 ... --l label_n And I receive the f