Hi Sam are you running this from a unix/linux command line? The >> usually means matlab. In any case, it looks like $CTAB is not being expanded by the shell. Try using echo to see what the actual command is.
cheers Bruce On Thu, 10 Sep 2015, Sam Zorowitz wrote: > Hi all, > > I am trying to make a custom annotation file. In doing so, I have created a > custom color lookup table. > I have attached the CLUT. I run the following command: > > >> mris_label2annot --subject $SUBJ --hemi $HEMI --ctab $CTAB --a $OUT --l > >> label_1 --l label_2 ... --l > label_n > > And I receive the following error: > > >> CTABreadASCII($CTAB): badly formed file > >> Reading ctab $CTAB > >> ERROR: reading $CTAB > > I have searched the archives for similar problems. The only previous hit I > could find is someone who > had made the CLUT on Windows -- but I have made mine on Unix and the > character encoding is us-ascii. > > Any advice from the listserv? Thanks! > > -Sam > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
