did you try putting an echo in front to see how it expands? What shell
are you using?
On Thu, 10 Sep 2015, Sam Zorowitz wrote:
Hi Bruce,
Thank you for the reply. I had been running it through python. After running
the command from the
command line, however, I am still receiving the same error.
Best,
Sam
On Thu, Sep 10, 2015 at 9:00 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
Hi Sam
are you running this from a unix/linux command line? The >> usually means
matlab. In any case, it looks like $CTAB is not being expanded by the
shell. Try using echo to see what the actual command is.
cheers
Bruce
On Thu, 10 Sep 2015,
Sam Zorowitz wrote:
> Hi all,
>
> I am trying to make a custom annotation file. In doing so, I have
created a custom color
lookup table.
> I have attached the CLUT. I run the following command:
>
> >> mris_label2annot --subject $SUBJ --hemi $HEMI --ctab $CTAB --a $OUT
--l label_1 --l
label_2 ... --l
> label_n
>
> And I receive the following error:
>
> >> CTABreadASCII($CTAB): badly formed file
> >> Reading ctab $CTAB
> >> ERROR: reading $CTAB
>
> I have searched the archives for similar problems. The only previous
hit I could find is
someone who
> had made the CLUT on Windows -- but I have made mine on Unix and the
character encoding
is us-ascii.
>
> Any advice from the listserv? Thanks!
>
> -Sam
>
>
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