Hi Bruce, Thank you for the reply. I had been running it through python. After running the command from the command line, however, I am still receiving the same error.
Best, Sam On Thu, Sep 10, 2015 at 9:00 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Sam > > are you running this from a unix/linux command line? The >> usually means > matlab. In any case, it looks like $CTAB is not being expanded by the > shell. Try using echo to see what the actual command is. > > cheers > Bruce > > > On Thu, 10 Sep 2015, > Sam Zorowitz wrote: > > > Hi all, > > > > I am trying to make a custom annotation file. In doing so, I have > created a custom color lookup table. > > I have attached the CLUT. I run the following command: > > > > >> mris_label2annot --subject $SUBJ --hemi $HEMI --ctab $CTAB --a $OUT > --l label_1 --l label_2 ... --l > > label_n > > > > And I receive the following error: > > > > >> CTABreadASCII($CTAB): badly formed file > > >> Reading ctab $CTAB > > >> ERROR: reading $CTAB > > > > I have searched the archives for similar problems. The only previous hit > I could find is someone who > > had made the CLUT on Windows -- but I have made mine on Unix and the > character encoding is us-ascii. > > > > Any advice from the listserv? Thanks! > > > > -Sam > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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