Hi all, I am trying to make a custom annotation file. In doing so, I have created a custom color lookup table. I have attached the CLUT. I run the following command:
>> mris_label2annot --subject $SUBJ --hemi $HEMI --ctab $CTAB --a $OUT --l label_1 --l label_2 ... --l label_n And I receive the following error: >> CTABreadASCII($CTAB): badly formed file >> Reading ctab $CTAB >> ERROR: reading $CTAB I have searched the archives for similar problems. The only previous hit I could find is someone who had made the CLUT on Windows -- but I have made mine on Unix and the character encoding is us-ascii. Any advice from the listserv? Thanks! -Sam
#$Id: Lausanne250LUT.txt v 1.00 2015/09/08 $ #No. Label Name: R G B A 0 unknown 0 0 0 0 1 bankssts_1 65 67 128 2 bankssts_2 64 68 128 3 bankssts_3 64 67 129 4 caudalanteriorcingulate_1 129 75 64 5 caudalanteriorcingulate_2 128 76 64 6 caudalmiddlefrontal_1 94 128 64 7 caudalmiddlefrontal_2 93 129 64 8 caudalmiddlefrontal_3 93 128 65 9 caudalmiddlefrontal_4 95 128 64 10 caudalmiddlefrontal_5 93 130 64 11 caudalmiddlefrontal_6 93 128 66 12 corpuscallosum 94 64 128 13 cuneus_1 129 86 64 14 cuneus_2 128 87 64 15 cuneus_3 128 86 65 16 entorhinal_1 65 128 67 17 frontalpole_1 65 111 128 18 fusiform_1 83 128 64 19 fusiform_2 82 129 64 20 fusiform_3 82 128 65 21 fusiform_4 84 128 64 22 fusiform_5 82 130 64 23 fusiform_6 82 128 66 24 fusiform_7 85 128 64 25 fusiform_8 82 131 64 26 inferiorparietal_1 129 64 118 27 inferiorparietal_10 128 65 118 28 inferiorparietal_2 128 64 119 29 inferiorparietal_3 130 64 118 30 inferiorparietal_4 128 66 118 31 inferiorparietal_5 128 64 120 32 inferiorparietal_6 131 64 118 33 inferiorparietal_7 128 67 118 34 inferiorparietal_8 128 64 121 35 inferiorparietal_9 132 64 118 36 inferiortemporal_1 65 122 128 37 inferiortemporal_2 64 123 128 38 inferiortemporal_3 64 122 129 39 inferiortemporal_4 66 122 128 40 inferiortemporal_5 64 124 128 41 inferiortemporal_6 64 122 130 42 inferiortemporal_7 67 122 128 43 inferiortemporal_8 64 125 128 44 insula_1 65 128 122 45 insula_2 64 129 122 46 insula_3 64 128 123 47 insula_4 66 128 122 48 insula_5 64 130 122 49 insula_6 64 128 124 50 insula_7 67 128 122 51 isthmuscingulate_1 129 118 64 52 isthmuscingulate_2 128 119 64 53 isthmuscingulate_3 128 118 65 54 lateraloccipital_1 65 78 128 55 lateraloccipital_10 64 79 128 56 lateraloccipital_11 64 78 129 57 lateraloccipital_2 66 78 128 58 lateraloccipital_3 64 80 128 59 lateraloccipital_4 64 78 130 60 lateraloccipital_5 67 78 128 61 lateraloccipital_6 64 81 128 62 lateraloccipital_7 64 78 131 63 lateraloccipital_8 68 78 128 64 lateraloccipital_9 64 82 128 65 lateralorbitofrontal_1 129 64 86 66 lateralorbitofrontal_2 128 65 86 67 lateralorbitofrontal_3 128 64 87 68 lateralorbitofrontal_4 130 64 86 69 lateralorbitofrontal_5 128 66 86 70 lateralorbitofrontal_6 128 64 88 71 lateralorbitofrontal_7 131 64 86 72 lingual_1 116 64 128 73 lingual_2 115 65 128 74 lingual_3 115 64 129 75 lingual_4 117 64 128 76 lingual_5 115 66 128 77 lingual_6 115 64 130 78 lingual_7 118 64 128 79 lingual_8 115 67 128 80 medialorbitofrontal_1 65 89 128 81 medialorbitofrontal_2 64 90 128 82 medialorbitofrontal_3 64 89 129 83 medialorbitofrontal_4 66 89 128 84 medialorbitofrontal_5 64 91 128 85 middletemporal_1 65 128 100 86 middletemporal_2 64 129 100 87 middletemporal_3 64 128 101 88 middletemporal_4 66 128 100 89 middletemporal_5 64 130 100 90 middletemporal_6 64 128 102 91 middletemporal_7 67 128 100 92 paracentral_1 72 64 128 93 paracentral_2 71 65 128 94 paracentral_3 71 64 129 95 paracentral_4 73 64 128 96 paracentral_5 71 66 128 97 parahippocampal_1 129 107 64 98 parahippocampal_2 128 108 64 99 parahippocampal_3 128 107 65 100 parsopercularis_1 127 64 128 101 parsopercularis_2 126 65 128 102 parsopercularis_3 126 64 129 103 parsopercularis_4 128 64 128 104 parsorbitalis_1 83 64 128 105 parsorbitalis_2 82 65 128 106 parstriangularis_1 72 128 64 107 parstriangularis_2 71 129 64 108 parstriangularis_3 71 128 65 109 pericalcarine_1 116 128 64 110 pericalcarine_2 115 129 64 111 pericalcarine_3 115 128 65 112 postcentral_1 65 128 78 113 postcentral_10 64 129 78 114 postcentral_11 64 128 79 115 postcentral_12 66 128 78 116 postcentral_13 64 130 78 117 postcentral_14 64 128 80 118 postcentral_2 67 128 78 119 postcentral_3 64 131 78 120 postcentral_4 64 128 81 121 postcentral_5 68 128 78 122 postcentral_6 64 132 78 123 postcentral_7 64 128 82 124 postcentral_8 69 128 78 125 postcentral_9 64 133 78 126 posteriorcingulate_1 65 100 128 127 posteriorcingulate_2 64 101 128 128 posteriorcingulate_3 64 100 129 129 posteriorcingulate_4 66 100 128 130 precentral_1 129 64 107 131 precentral_10 128 65 107 132 precentral_11 128 64 108 133 precentral_12 130 64 107 134 precentral_13 128 66 107 135 precentral_14 128 64 109 136 precentral_15 131 64 107 137 precentral_16 128 67 107 138 precentral_2 128 64 110 139 precentral_3 132 64 107 140 precentral_4 128 68 107 141 precentral_5 128 64 111 142 precentral_6 133 64 107 143 precentral_7 128 69 107 144 precentral_8 128 64 112 145 precentral_9 134 64 107 146 precuneus_1 129 64 75 147 precuneus_10 128 65 75 148 precuneus_11 128 64 76 149 precuneus_2 130 64 75 150 precuneus_3 128 66 75 151 precuneus_4 128 64 77 152 precuneus_5 131 64 75 153 precuneus_6 128 67 75 154 precuneus_7 128 64 78 155 precuneus_8 132 64 75 156 precuneus_9 128 68 75 157 rostralanteriorcingulate_1 127 128 64 158 rostralanteriorcingulate_2 126 129 64 159 rostralmiddlefrontal_1 65 128 111 160 rostralmiddlefrontal_10 64 129 111 161 rostralmiddlefrontal_11 64 128 112 162 rostralmiddlefrontal_12 66 128 111 163 rostralmiddlefrontal_2 64 130 111 164 rostralmiddlefrontal_3 64 128 113 165 rostralmiddlefrontal_4 67 128 111 166 rostralmiddlefrontal_5 64 131 111 167 rostralmiddlefrontal_6 64 128 114 168 rostralmiddlefrontal_7 68 128 111 169 rostralmiddlefrontal_8 64 132 111 170 rostralmiddlefrontal_9 64 128 115 171 superiorfrontal_1 129 64 97 172 superiorfrontal_10 128 65 97 173 superiorfrontal_11 128 64 98 174 superiorfrontal_12 130 64 97 175 superiorfrontal_13 128 66 97 176 superiorfrontal_14 128 64 99 177 superiorfrontal_15 131 64 97 178 superiorfrontal_16 128 67 97 179 superiorfrontal_17 128 64 100 180 superiorfrontal_18 132 64 97 181 superiorfrontal_2 128 68 97 182 superiorfrontal_3 128 64 101 183 superiorfrontal_4 133 64 97 184 superiorfrontal_5 128 69 97 185 superiorfrontal_6 128 64 102 186 superiorfrontal_7 134 64 97 187 superiorfrontal_8 128 70 97 188 superiorfrontal_9 128 64 103 189 superiorparietal_1 129 64 64 190 superiorparietal_10 128 65 64 191 superiorparietal_11 128 64 65 192 superiorparietal_12 130 64 64 193 superiorparietal_13 128 66 64 194 superiorparietal_14 128 64 66 195 superiorparietal_2 131 64 64 196 superiorparietal_3 128 67 64 197 superiorparietal_4 128 64 67 198 superiorparietal_5 132 64 64 199 superiorparietal_6 128 68 64 200 superiorparietal_7 128 64 68 201 superiorparietal_8 133 64 64 202 superiorparietal_9 128 69 64 203 superiortemporal_1 65 128 89 204 superiortemporal_10 64 129 89 205 superiortemporal_11 64 128 90 206 superiortemporal_2 66 128 89 207 superiortemporal_3 64 130 89 208 superiortemporal_4 64 128 91 209 superiortemporal_5 67 128 89 210 superiortemporal_6 64 131 89 211 superiortemporal_7 64 128 92 212 superiortemporal_8 68 128 89 213 superiortemporal_9 64 132 89 214 supramarginal_1 105 64 128 215 supramarginal_10 104 65 128 216 supramarginal_2 104 64 129 217 supramarginal_3 106 64 128 218 supramarginal_4 104 66 128 219 supramarginal_5 104 64 130 220 supramarginal_6 107 64 128 221 supramarginal_7 104 67 128 222 supramarginal_8 104 64 131 223 supramarginal_9 108 64 128 224 temporalpole_1 129 97 64 225 transversetemporal_1 105 128 64 226 transversetemporal_2 104 129 64
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