>
> Also, I noticed that you have gender as a continuous variable. It should
> be discrete
>
>
>
>
> Original Message ----
> Subject: Re: [Freesurfer] URGENT: Error in analyse
> Date: Wed, 28 May 2014 17:30:11 -0400
> From: dgw
&g
:Re: [Freesurfer] URGENT: Error in analyse
Date: Wed, 28 May 2014 17:30:11 -0400
From: dgw
Reply-To: Freesurfer support list
To: Freesurfer support list
CC: ni...@nmr.mgh.harvard.edu
Your subject name is wrong.
You are saying the subject name is: 54987500
While it is
Your subject name is wrong.
You are saying the subject name is: 54987500
While it is actually: 54987500_output
You should either change the name of the SUBJECT directory or change the
subject id you are giving to mri_glmfit.
HTH
D
On Wed, May 28, 2014 at 5:17 PM, Saloni Sharma wrote:
Saloni,
are you certain that you ran recon-qcache on subject 54987500? the
error message says that the file lh.thickness.fwhm10.fsaverage.mgh is
missing, and this file is created by -qcache. i'd suggest running:
recon-all -s 54987500 -qcache
then confirm that this file exists.
Nick
It prints out fine and gives results if I only use it to analyse two
groups(differentiated on stress levels) but if I add gender as a discrete
variable or even as a continuous one along with the groups it shows this error.
Sent from my iPhone
> On 27 May 2014, at 23:40, Douglas N Greve wrote:
Does it print out anything else? An alternative is to use the command
line stream (create your own fsgd file, run mris_preproc, smooth,
mri_glmfit, mri_glmfit-sim)
doug
On 05/27/2014 06:38 AM, Saloni Sharma wrote:
> I am attaching a screen shot of the error, if it helps!
>
>
> On 26 May 2014
so if you click "analyze" without gender it works fine? Sorry, I missed
that. I think you'll need to wait for Doug or Nick to reply, but you might
send your qdec file and the group.levels files
sorry
Bruce
On Mon, 26 May 2014, Saloni Sharma wrote:
> Hey Bruce,
>
> Yes, that directory exists,
yes exactly, if I click analyze without the gender it works fine. No thats
okay, what do you need from me again?
On 26 May 2014 17:11, Bruce Fischl wrote:
> so if you click "analyze" without gender it works fine? Sorry, I missed
> that. I think you'll need to wait for Doug or Nick to reply, but
Hey Bruce,
Yes, that directory exists, as I said if I only choose groups(high stress
and low stress) as the discrete variables its runs fine and analyses, it
only shows the error if I add more factors (like gender) into the software.
My subjects directory is set to
export SUBJECTS_DIR=/tallaght-d
Hi Saloni
Does that directory exist? What is your SUBJECTS_DIR set to? And have you
run recon-all -qcache on all your subjects?
cheers
Bruce
On Mon, 26 May 2014, Saloni Sharma wrote:
> Dear Freesurfers,
>
> So I have followed all the instructions given on your website in order to
> use qdec. W
Dear Freesurfers,
So I have followed all the instructions given on your website in order to
use qdec. When i analyse the images only using a file group.levels that
defines the two groups I'm comparing the analysis runs fine and gives me
results, but when I add gender, for instance, as a discrete f
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