Does it print out anything else? An alternative is to use the command line stream (create your own fsgd file, run mris_preproc, smooth, mri_glmfit, mri_glmfit-sim) doug
On 05/27/2014 06:38 AM, Saloni Sharma wrote: > I am attaching a screen shot of the error, if it helps! > > > On 26 May 2014 17:14, Saloni Sharma <sharm...@tcd.ie > <mailto:sharm...@tcd.ie>> wrote: > > yes exactly, if I click analyze without the gender it works fine. > No thats okay, what do you need from me again? > > > On 26 May 2014 17:11, Bruce Fischl <fis...@nmr.mgh.harvard.edu > <mailto:fis...@nmr.mgh.harvard.edu>> wrote: > > so if you click "analyze" without gender it works fine? Sorry, > I missed > that. I think you'll need to wait for Doug or Nick to reply, > but you might > send your qdec file and the group.levels files > > sorry > Bruce > > On Mon, 26 May 2014, Saloni Sharma wrote: > > > Hey Bruce, > > > > Yes, that directory exists, as I said if I only choose > groups(high stress > > and low stress) as the discrete variables its runs fine and > analyses, it > > only shows the error if I add more factors (like gender) > into the software. > > > > My subjects directory is set to > > export > SUBJECTS_DIR=/tallaght-disk4/IMAGEN/Saloni_data/freesurfer_output/ > > > > and yes I have run recon-all-qcache on all my subjects. > > > > Saloni > > > > > > On 26 May 2014 16:58, Bruce Fischl > <fis...@nmr.mgh.harvard.edu > <mailto:fis...@nmr.mgh.harvard.edu>> wrote: > > Hi Saloni > > > > Does that directory exist? What is your SUBJECTS_DIR > set to? And > > have you > > run recon-all -qcache on all your subjects? > > > > cheers > > Bruce > > On Mon, 26 May 2014, Saloni Sharma wrote: > > > > > Dear Freesurfers, > > > > > > So I have followed all the instructions given on > your website > > in order to > > > use qdec. When i analyse the images only using a file > > group.levels that > > > defines the two groups I'm comparing the analysis > runs fine > > and gives me > > > results, but when I add gender, for instance, as a > discrete > > factor, it loads > > > the data successfully but when I click analyse it > shows the > > following error: > > > > > > Error in Analyze: Couldn't > > openfile/tallaght-disk4/IMAGEN/Saloni_data/freesurfer_output/000072882642/surf/ > > lh.t > > > hickness.fwhm10.fsaverage.mgh > > > > > > Please guide me as to what is going wrong and what I > can do to > > fix it. I > > > would appreciate a quick response as my thesis > submission is > > due in two > > > weeks and I cannot proceed until this problem is sorted. > > > > > > Thanks and regards, > > > Saloni > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the > person to whom > > it is > > addressed. If you believe this e-mail was sent to you in > error and the > > e-mail > > contains patient information, please contact the Partners > Compliance > > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was > sent to you > > in error > > but does not contain patient information, please contact the > sender > > and properly > > dispose of the e-mail. > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
