Hey Bruce, Yes, that directory exists, as I said if I only choose groups(high stress and low stress) as the discrete variables its runs fine and analyses, it only shows the error if I add more factors (like gender) into the software.
My subjects directory is set to export SUBJECTS_DIR=/tallaght-disk4/IMAGEN/Saloni_data/freesurfer_output/ and yes I have run recon-all-qcache on all my subjects. Saloni On 26 May 2014 16:58, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Saloni > > Does that directory exist? What is your SUBJECTS_DIR set to? And have you > run recon-all -qcache on all your subjects? > > cheers > Bruce > On Mon, 26 May 2014, Saloni Sharma wrote: > > > Dear Freesurfers, > > > > So I have followed all the instructions given on your website in order to > > use qdec. When i analyse the images only using a file group.levels that > > defines the two groups I'm comparing the analysis runs fine and gives me > > results, but when I add gender, for instance, as a discrete factor, it > loads > > the data successfully but when I click analyse it shows the following > error: > > > > Error in Analyze: Couldn't open > file/tallaght-disk4/IMAGEN/Saloni_data/freesurfer_output/000072882642/surf/lh.t > > hickness.fwhm10.fsaverage.mgh > > > > Please guide me as to what is going wrong and what I can do to fix it. I > > would appreciate a quick response as my thesis submission is due in two > > weeks and I cannot proceed until this problem is sorted. > > > > Thanks and regards, > > Saloni > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
