It prints out fine and gives results if I only use it to analyse two groups(differentiated on stress levels) but if I add gender as a discrete variable or even as a continuous one along with the groups it shows this error.
Sent from my iPhone > On 27 May 2014, at 23:40, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > > > Does it print out anything else? An alternative is to use the command > line stream (create your own fsgd file, run mris_preproc, smooth, > mri_glmfit, mri_glmfit-sim) > doug > > > > >> On 05/27/2014 06:38 AM, Saloni Sharma wrote: >> I am attaching a screen shot of the error, if it helps! >> >> >> On 26 May 2014 17:14, Saloni Sharma <sharm...@tcd.ie >> <mailto:sharm...@tcd.ie>> wrote: >> >> yes exactly, if I click analyze without the gender it works fine. >> No thats okay, what do you need from me again? >> >> >> On 26 May 2014 17:11, Bruce Fischl <fis...@nmr.mgh.harvard.edu >> <mailto:fis...@nmr.mgh.harvard.edu>> wrote: >> >> so if you click "analyze" without gender it works fine? Sorry, >> I missed >> that. I think you'll need to wait for Doug or Nick to reply, >> but you might >> send your qdec file and the group.levels files >> >> sorry >> Bruce >> >>> On Mon, 26 May 2014, Saloni Sharma wrote: >>> >>> Hey Bruce, >>> >>> Yes, that directory exists, as I said if I only choose >> groups(high stress >>> and low stress) as the discrete variables its runs fine and >> analyses, it >>> only shows the error if I add more factors (like gender) >> into the software. >>> >>> My subjects directory is set to >>> export >> SUBJECTS_DIR=/tallaght-disk4/IMAGEN/Saloni_data/freesurfer_output/ >>> >>> and yes I have run recon-all-qcache on all my subjects. >>> >>> Saloni >>> >>> >>> On 26 May 2014 16:58, Bruce Fischl >> <fis...@nmr.mgh.harvard.edu >> <mailto:fis...@nmr.mgh.harvard.edu>> wrote: >>> Hi Saloni >>> >>> Does that directory exist? What is your SUBJECTS_DIR >> set to? And >>> have you >>> run recon-all -qcache on all your subjects? >>> >>> cheers >>> Bruce >>>> On Mon, 26 May 2014, Saloni Sharma wrote: >>>> >>>> Dear Freesurfers, >>>> >>>> So I have followed all the instructions given on >> your website >>> in order to >>>> use qdec. When i analyse the images only using a file >>> group.levels that >>>> defines the two groups I'm comparing the analysis >> runs fine >>> and gives me >>>> results, but when I add gender, for instance, as a >> discrete >>> factor, it loads >>>> the data successfully but when I click analyse it >> shows the >>> following error: >>>> >>>> Error in Analyze: Couldn't >> >> openfile/tallaght-disk4/IMAGEN/Saloni_data/freesurfer_output/000072882642/surf/ >>> lh.t >>>> hickness.fwhm10.fsaverage.mgh >>>> >>>> Please guide me as to what is going wrong and what I >> can do to >>> fix it. I >>>> would appreciate a quick response as my thesis >> submission is >>> due in two >>>> weeks and I cannot proceed until this problem is sorted. >>>> >>>> Thanks and regards, >>>> Saloni >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the >> person to whom >>> it is >>> addressed. If you believe this e-mail was sent to you in >> error and the >>> e-mail >>> contains patient information, please contact the Partners >> Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was >> sent to you >>> in error >>> but does not contain patient information, please contact the >> sender >>> and properly >>> dispose of the e-mail. >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
