Hi Nick,
Looks like it's working great! Thanks for the help.
-Kevin
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Nick Schmansky
Sent: Monday, June 01, 2009 2:16 PM
To: k.schei...@ucla.edu
Cc: Freesurfer Mail
Can you send the log file?
Nathan Dankner wrote:
Doug,
The Linux distribution I am using is equivalent to Redhat 5, and I am
running this on freesurfer version 4.2.0. The script I ran was
mri_glmfit-sim-mc-z.abs.2, which the qdec gui output for me. I believe I
attempted it with 6000 iteration
When specifying a FWHM, they may end up being a little bit different
because the distance between the vertices is more on the pial than on
the white, so you don't need as many iterations to get the same FWHM.
Having said that, the difference is pretty darn small between white and
pial.
doug
Doug,
The Linux distribution I am using is equivalent to Redhat 5, and I am
running this on freesurfer version 4.2.0. The script I ran was
mri_glmfit-sim-mc-z.abs.2, which the qdec gui output for me. I believe I
attempted it with 6000 iterations. Do you need any more info? It seems the
other t
That is quite excessive, but I'll need more info than you have supplied.
Can you take a look at surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
and send me the info requested there?
thanks!
doug
Dankner, Nathan (NIH/NIMH) [F] wrote:
Hi all,
I have started working with clusterwise correction,
What's in T1-neuromag/slices? What version are you using?
SHRIKANTH KULASHEKHAR wrote:
Hi all,
When I attempt to create a high-resolution head surface tessellation
using mkheadsurf, I end up with the following errors:
For " mkheadsurf -subjid xxx" the error: cannot find volume T1 for xxx
or
Hi Natham,
This should not take that long. For me, it has never been more than 2-3
days for 5000 interactions using mc-z.
> Hi all,
>
> I have started working with clusterwise correction, and initially
> attempted to run the mri_glmfit mc-z script with 6000 iterations. After
> two weeks it stil
Hi all,
I have started working with clusterwise correction, and initially attempted to
run the mri_glmfit mc-z script with 6000 iterations. After two weeks it still
wasn't finished, so I stopped it, and as a test ran the script with 100
iterations to see how long it would take. It still took
Hi all,
When I attempt to create a high-resolution head surface tessellation using
mkheadsurf, I end up with the following errors:
For " mkheadsurf -subjid xxx" the error: cannot find volume T1 for xxx
or for
[r...@localhost bem]# mkheadsurf -subjid xxx -srcvol T1-neuromag/slices
INFO: log fil
Hi Andreas,
I get the same error, in almost the same scenario; while re-running some
studies with FS-4.3.x. The I also run them on a cluster with large amount of
memory running Gentoo linux, and CentOS4_x64 FreeSurfer binaries. To complete
the studies I take them on a 32 bit platform with Kubun
Hi,
We've been encountering the following error when re-running 43 healthy
subjects through both the recon-all -all stream and through the
recon-all -long stream. The error seem to occur quite random with
regards to the subjects:
"
#...@# Cortical ribbon mask Tue Jun 2 03:09:13 CEST 2009
/work/2
Hi yczhang,
the smoothing only considers the topology of the surface, so smoothing on
the white and the pial are equivalent.
cheers,
Bruce
On Tue, 2 Jun 2009,
Zhangyuanchao wrote:
I am still not quite clear about the averaging of curvature. Sorry about that.
could you tell me exactly wh
Hi,
I want to use sulc measure to make group analysis, before making analysis,I
have to smooth the sulc measure.
Should I smooth it directly or I first get the absolute value,then I smooth it?
you know sulc has both positive and negative value?
Best,
Gang
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