What's in T1-neuromag/slices? What version are you using?
SHRIKANTH KULASHEKHAR wrote:
Hi all,
When I attempt to create a high-resolution head surface tessellation
using mkheadsurf, I end up with the following errors:
For " mkheadsurf -subjid xxx" the error: cannot find volume T1 for xxx
or for
[r...@localhost bem]# mkheadsurf -subjid xxx -srcvol T1-neuromag/slices
INFO: log file is
/usr/local/freesurfer/subjects/xxx/scripts/mkheadsurf.log
--------------------------------
Wed May 6 01:03:46 EEST 2009
/usr/local/freesurfer/subjects/xxx/bem
mri_seghead --invol
/usr/local/freesurfer/subjects/xxx/mri/T1-neuromag/slices --outvol
/usr/local/freesurfer/subjects/xxx/mri/seghead --fill 255 --thresh1 20
--thresh2 20 --nhitsmin 2
--------------------------------
input volume: /usr/local/freesurfer/subjects/xxx/mri/T1-neuromag/slices
output volume: /usr/local/freesurfer/subjects/xxx/mri/seghead
threshold1: 20
threshold2: 20
nhitsmin: 2
fill value: 255
Loading input volume
corRead(): can't open file
/usr/local/freesurfer/subjects/xxx/mri/T1-neuromag/slices/COR-.info
ERROR: could not read
/usr/local/freesurfer/subjects/xxx/mri/T1-neuromag/slices
ERROR: mri_seghead
Any advice on what could be wrong ?
Thanks in advance
shriks
------------------------------------------------------------------------
Explore and discover exciting holidays and getaways with Yahoo! India
Travel Click here!
<http://in.rd.yahoo.com/tagline_Travel_1/*http://in.travel.yahoo.com/>
------------------------------------------------------------------------
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
