Hi Andreas, I get the same error, in almost the same scenario; while re-running some studies with FS-4.3.x. The I also run them on a cluster with large amount of memory running Gentoo linux, and CentOS4_x64 FreeSurfer binaries. To complete the studies I take them on a 32 bit platform with Kubunto and CentOS4_x32 FreeSurfer binaries. This way, all the failed studies completed just fine.
Best, Martin On Tuesday 02 June 2009 14:52:32 Andreas Engvig wrote: > Hi, > > We've been encountering the following error when re-running 43 healthy > subjects through both the recon-all -all stream and through the > recon-all -long stream. The error seem to occur quite random with > regards to the subjects: > > " > #...@# Cortical ribbon mask Tue Jun 2 03:09:13 CEST 2009 > /work/220791.d/2039B.long.2039A/mri > > mris_volmask --label_left_white 2 --label_left_ribbon 3 > --label_right_white 41 --label_right_ribbon 42 --save_ribbon > --save_distance 2039B.long.2039A > > SUBJECTS_DIR is /work/220791.d > WARNING: the source volume info is not consistent between > WARNING: the info contained in the surface data and that of the transform. > WARNING: the source volume info is not consistent between > WARNING: the info contained in the surface data and that of the transform. > WARNING: the source volume info is not consistent between > WARNING: the info contained in the surface data and that of the transform. > WARNING: the source volume info is not consistent between > WARNING: the info contained in the surface data and that of the transform. > Segmentation fault > " > > We've used Freesurfer v.4.1. The scans have previously been run in fs. > 4.05. > > After the error occurs, I've tried to rerun the subjects just through > this step. They usually complete the step after 1-2 subsequent reruns. > However, this is quite time consuming - any suggestions how to solve > this? > > We use centOS4 64bit. I run the subjects on our computing cluster > which allocates 2,1 GB of memory for each subject. I've seen the error > addressed on the list earlier, but I couldn't find any obvious > solution. > > Thanks! > > > Best regards > > Andreas Engvig > Center for the Study of Human Cognition > University of Oslo > PB 1094 Blindern > 0317 Oslo > Cell: +47 988 58 770 > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
