Hello everyone,
How can I can I print out the display images from
tksurfer and tkmedit other than manually saving them
into tiff and then printing them.IS there any way to
print them directly?
THAnx
Chacko.
__
Do You Yahoo!?
Tired of spam? Yah
there are some people using it for monkey data, not sure about mice. I
don't have much experience with the monkey stuff, so you'll need to get
that from someone else on the list (hopefully)
Bruce
On Thu, 29 Jun 2006, Chacko
Cherian wrote:
The other question that I have is about templates.I
that's normal. You need to click the redraw button (or alt-r)
On Thu, 29 Jun
2006, Chacko Cherian wrote:
THanks Bruce.
I ve been having some problems with display..in the
sense that when I minimize the diplay window and open
it back there's nothing in it.Just wnated to confirm
whether this is
The other question that I have is about templates.I
suppose Freesurfer uses MNI templates.How do I
add my templates on to Freesurfer if I want to use say
monkey or mice data?
THAnks
Chacko.
--- Bruce Fischl <[EMAIL PROTECTED]> wrote:
> Hi Chacko,
>
> after tksurfer is loaded, from the g
THanks Bruce.
I ve been having some problems with display..in the
sense that when I minimize the diplay window and open
it back there's nothing in it.Just wnated to confirm
whether this is any sort of graphics driver problem.
THanx
Chacko.
--- Bruce Fischl <[EMAIL PROTECTED]> wrote:
> Hi Chacko
Hi Chacko,
after tksurfer is loaded, from the gui do file->curvature->load
curvature->rh.curv (or rh.sulc)
cheers,
Bruce
On Thu, 29 Jun 2006, Chacko Cherian wrote:
Hello everyone,
In spherical morphometry,to create the spherical
surfaces,Im using the step 8.1 in the Wiki tutorial.
Could som
Hello everyone,
In spherical morphometry,to create the spherical
surfaces,Im using the step 8.1 in the Wiki tutorial.
Could someone please explain what the colors stand
for?
DOING "tksurfer subj001 rh sphere" gives me a sphere
on the display.But I'm not able to map it and provide
the overlay info
Hi Sasha,
it uses the ?h.white by default, but you can change that by giving
mris_anatomical_stats an additional argument (e.g. ?h.pial) at the end of
the cmd line
Bruce
On Thu, 29 Jun 2006, Sasha Wolosin wrote:
Dear all,
Are the regional surface areas computed by mris_anatomical_stats
usin
Thanks. Can I make mris_anatomical_stats use the pial surface instead?
>>> Doug Greve <[EMAIL PROTECTED]> 6/29/2006 1:29 pm >>>
White.
doug
Sasha Wolosin wrote:
>Dear all,
> Are the regional surface areas computed by mris_anatomical_stats
>using the ?h.white surface or the ?h.pial surface?
>T
Oh, don't do that! recon-all will compare the auto with the non-auto.
If they are the same then it will re-compute the auto and simply copy
to the non-auto, and your changes will be lost. If they are different,
then it will recompute the auto but will not propagate it to the
non-auto. Make sen
or in your case dave, just:
cp brainmask.mgz brainmask.auto.mgz
since you manually edited brainmask.mgz
On Thu, 2006-06-29 at 14:18 -0400, Doug Greve wrote:
>
> I'm not sure what will happen. Safest to just recreate it:
>
> cd subject/mri
> mri_watershed T1.mgz brainmask.auto.mgz
>
>
> [E
I'm not sure what will happen. Safest to just recreate it:
cd subject/mri
mri_watershed T1.mgz brainmask.auto.mgz
[EMAIL PROTECTED] wrote:
Alright I converted the COR files to mgz fine, and saved the volume as
brainmask.mgz. All looks good. But before I run -autorecon2, am I
going to r
Alright I converted the COR files to mgz fine, and saved the volume as
brainmask.mgz. All looks good. But before I run -autorecon2, am I
going to run into problems because I only have a brainmask.mgz and not a
brainmask.auto.mgz? (I deleted the old brainmask.auto.mgz because it
was the old volum
White.
doug
Sasha Wolosin wrote:
Dear all,
Are the regional surface areas computed by mris_anatomical_stats
using the ?h.white surface or the ?h.pial surface?
Thanks,
Sasha
Disclaimer:
The materials in this e-mail are private and may contain Protected Health
Information. Please note that
Marc,
Or you can set the path to your own, newer fsl with something like
setenv FSL_DIR /usr/local/fsl
if you'd rather not use the fsl distro that comes with freesurfer.
Don
> -Original Message-
> From: [EMAIL PROTECTED]
> [mailto:[EMAIL PROTECTED] On Behalf Of
> Nick
Dear all,
Are the regional surface areas computed by mris_anatomical_stats
using the ?h.white surface or the ?h.pial surface?
Thanks,
Sasha
Disclaimer:
The materials in this e-mail are private and may contain Protected Health
Information. Please note that e-mail is not necessarily confidentia
Marc,
After sourcing the $FREESURFER_HOME/SetUpFreeSurfer.csh file, add this
line:
unsetenv TCLLIBPATH
This is what is causing the conflict with FSL's TCL libs.
Nick
On Thu, 2006-06-29 at 12:26 -0400, Marc D. Yelle wrote:
> Hello, I am in need of some help. I have spent the last two days t
Hello, I am in need of some help. I have spent the last two days trying to
get fsl and freesurfer to play well together. I have the newest version of
FSL installed and it works perfectly. I then installed freesurfer per the
instructions listed in the wiki. After these steps, freesurfer works, bu
Yes, that is definitely an option although only one of our machines currently runs Linux. I'm sure we can work around that. Thanks for all the help. I'm sure we'll have more questions for you..:)Anil.
On 6/29/06, Bruce Fischl <[EMAIL PROTECTED]> wrote:
you could skip the aseg but then you'll need t
you could skip the aseg but then you'll need to manually edit the
surfaces, which can be time consuming. Running on more than one computer
isn't an option for you?
On Wed, 28 Jun 2006, Anil Roy wrote:
Hi Everyone,
Is there a way to process the minc files I have and only obtain the
anatomical
our pleasure (most of the time)
On Thu, 29 Jun 2006, Sebastian Moeller
wrote:
Hi Nick, hi Bruce,
On 29. Jun 2006, at 00:39 Uhr, Nick Schmansky wrote:
The dev build is not posted on the web anymore, rather, bug fixes and
tested minor enhancements get folded into the stable build and release
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