Marc,
Or you can set the path to your own, newer fsl with something like
setenv FSL_DIR /usr/local/fsl
if you'd rather not use the fsl distro that comes with freesurfer.
Don
> -----Original Message-----
> From: [EMAIL PROTECTED]
> [mailto:[EMAIL PROTECTED] On Behalf Of
> Nick Schmansky
> Sent: Thursday, June 29, 2006 11:05 AM
> To: Marc D. Yelle
> Cc: Freesurfer Mailing List
> Subject: Re: [Freesurfer] FreeSurfer Newbie can't get working
> with FSL onMac OS 10.4
>
>
> Marc,
>
> After sourcing the $FREESURFER_HOME/SetUpFreeSurfer.csh file, add this
> line:
>
> unsetenv TCLLIBPATH
>
> This is what is causing the conflict with FSL's TCL libs.
>
> Nick
>
>
> On Thu, 2006-06-29 at 12:26 -0400, Marc D. Yelle wrote:
> > Hello, I am in need of some help. I have spent the last two days
> > trying to get fsl and freesurfer to play well together. I have the
> > newest version of FSL installed and it works perfectly. I then
> > installed freesurfer per the instructions listed in the wiki. After
> > these steps, freesurfer works, but fsl won't open. I get
> this error
> > message:
> >
> > MINC_LIB_DIR /usr/local/freesurfer/mni/lib
> > PERL5LIB
> > /usr/local/freesurfer/mni/lib/../System/Library/Perl/5.8.6:/sw/l
> > ib/perl5:/sw/lib/perl5/darwin
> > GSL_DIR /usr/local/freesurfer/lib/gsl
> > TCLLIBPATH /usr/local/freesurfer/lib/tcltktixblt/lib
> > MISC_LIB /usr/local/freesurfer/lib/misc/lib
> > FSL_DIR /usr/local/freesurfer/fsl
> >
> > Marc-Yelles-Computer 1% echo $FSLDIR
> > /usr/local/fsl
> >
> > Marc-Yelles-Computer 2% fsl
> > Error in startup script: no suitable image found. Did find:
> > /usr/local/freesurfer/lib/tcltktixblt/lib/libtix8.1.8.4.a:
> > unknown file type, first eight bytes: 0x21 0x3C 0x61 0x72 0x63 0x68
> > 0x3E 0x0A
> > /usr/local/freesurfer/lib/tcltktixblt/lib/libtix8.1.8.4.a:
> > unknown file type, first eight bytes: 0x21 0x3C 0x61 0x72 0x63 0x68
> > 0x3E 0x0A
> > while executing
> > "load /usr/local/freesurfer/lib/tcltktixblt/lib/libtix8.1.8.4.a Tix"
> > ("package ifneeded" script)
> > invoked from within
> > "package require Tix"
> > invoked from within
> > "if { [ info exists env(TCLTKSHELL) ] && $env(TCLTKSHELL)
> == "wish" } {
> > package require Tk
> > package require Tix
> > tix configure -scheme TixGr..."
> > (file "/usr/local/fsl/tcl/fslstart.tcl" line 3)
> > invoked from within
> > "source [ file dirname [ info script ] ]/fslstart.tcl"
> > (file "/usr/local/fsl/tcl/fsl.tcl" line 71)
> > invoked from within
> > "source ${FSLDIR}/tcl/${origname}.tcl"
> > (file "/usr/local/fsl/bin/fsl" line 21
> >
> >
> > I tinkered with the setupfreesurfer.csh and the freesurferenv.csh
> > files and got it to list FSL_DIR as usr/local/fsl but the program
> > still wouldn't work.
> >
> > If I comment out the two freesurfer lines in my .cshrc
> file, fsl works
> > perfectly once again. My only guess is that there is a
> problem with
> > both fsl and freesurfer having tktcl libraries. But my
> understanding
> > of UNIX, etc is somewhat limited. Below I have also attached my
> > .cshrc :
> >
> > #!/bin/tcsh
> > set path = (/usr/X11R6/bin $path /sw/sbin /sw/bin
> > /Users/marcyelle/bin) set prompt="`hostname -s` \!% " source
> > /sw/bin/init.csh source /usr/local/rsi/idl_5.6/bin/idl_setup
> > setenv IDL_PATH "<IDL_DEFAULT>:+/usr/local/rsi/idl_5.6/local_lib"
> > setenv FREESURFER_HOME /usr/local/freesurfer
> > source $FREESURFER_HOME/SetUpFreeSurfer.csh
> > setenv FSLDIR /usr/local/fsl
> > source ${FSLDIR}/etc/fslconf/fsl.csh
> > setenv PATH ${FSLDIR}/bin:${PATH}
> > unsetenv LANG
> >
> >
> > Thank you in advance for your assistance, I need it! Sorry for the
> > long email, I simply wanted to give you as much info as I
> could. Take
> > care.
> >
>
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