Hello, I am in need of some help. I have spent the last two days trying to
get fsl and freesurfer to play well together. I have the newest version of
FSL installed and it works perfectly. I then installed freesurfer per the
instructions listed in the wiki. After these steps, freesurfer works, but
fsl won't open. I get this error message:
MINC_LIB_DIR /usr/local/freesurfer/mni/lib
PERL5LIB
/usr/local/freesurfer/mni/lib/../System/Library/Perl/5.8.6:/sw/l
ib/perl5:/sw/lib/perl5/darwin
GSL_DIR /usr/local/freesurfer/lib/gsl
TCLLIBPATH /usr/local/freesurfer/lib/tcltktixblt/lib
MISC_LIB /usr/local/freesurfer/lib/misc/lib
FSL_DIR /usr/local/freesurfer/fsl
Marc-Yelles-Computer 1% echo $FSLDIR
/usr/local/fsl
Marc-Yelles-Computer 2% fsl
Error in startup script: no suitable image found. Did find:
/usr/local/freesurfer/lib/tcltktixblt/lib/libtix8.1.8.4.a: unknown
file
type, first eight bytes: 0x21 0x3C 0x61 0x72 0x63 0x68 0x3E 0x0A
/usr/local/freesurfer/lib/tcltktixblt/lib/libtix8.1.8.4.a: unknown
file
type, first eight bytes: 0x21 0x3C 0x61 0x72 0x63 0x68 0x3E 0x0A
while executing
"load /usr/local/freesurfer/lib/tcltktixblt/lib/libtix8.1.8.4.a Tix"
("package ifneeded" script)
invoked from within
"package require Tix"
invoked from within
"if { [ info exists env(TCLTKSHELL) ] && $env(TCLTKSHELL) == "wish" } {
package require Tk
package require Tix
tix configure -scheme TixGr..."
(file "/usr/local/fsl/tcl/fslstart.tcl" line 3)
invoked from within
"source [ file dirname [ info script ] ]/fslstart.tcl"
(file "/usr/local/fsl/tcl/fsl.tcl" line 71)
invoked from within
"source ${FSLDIR}/tcl/${origname}.tcl"
(file "/usr/local/fsl/bin/fsl" line 21
I tinkered with the setupfreesurfer.csh and the freesurferenv.csh files and
got it to list FSL_DIR as usr/local/fsl but the program still wouldn't work.
If I comment out the two freesurfer lines in my .cshrc file, fsl works
perfectly once again. My only guess is that there is a problem with both
fsl and freesurfer having tktcl libraries. But my understanding of UNIX,
etc is somewhat limited. Below I have also attached my .cshrc :
#!/bin/tcsh
set path = (/usr/X11R6/bin $path /sw/sbin /sw/bin /Users/marcyelle/bin)
set prompt="`hostname -s` \!% "
source /sw/bin/init.csh
source /usr/local/rsi/idl_5.6/bin/idl_setup
setenv IDL_PATH "<IDL_DEFAULT>:+/usr/local/rsi/idl_5.6/local_lib"
setenv FREESURFER_HOME /usr/local/freesurfer
source $FREESURFER_HOME/SetUpFreeSurfer.csh
setenv FSLDIR /usr/local/fsl
source ${FSLDIR}/etc/fslconf/fsl.csh
setenv PATH ${FSLDIR}/bin:${PATH}
unsetenv LANG
Thank you in advance for your assistance, I need it! Sorry for the long
email, I simply wanted to give you as much info as I could. Take care.
--
Sláinte,
-m
Marc D. Yelle
Dept. Neurobiology and Anatomy
Wake Forest School of Medicine
Medical Center Blvd.
Winston-Salem, NC 27157
[EMAIL PROTECTED]
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