Marc,
After sourcing the $FREESURFER_HOME/SetUpFreeSurfer.csh file, add this
line:
unsetenv TCLLIBPATH
This is what is causing the conflict with FSL's TCL libs.
Nick
On Thu, 2006-06-29 at 12:26 -0400, Marc D. Yelle wrote:
> Hello, I am in need of some help. I have spent the last two days trying to
> get fsl and freesurfer to play well together. I have the newest version of
> FSL installed and it works perfectly. I then installed freesurfer per the
> instructions listed in the wiki. After these steps, freesurfer works, but
> fsl won't open. I get this error message:
>
> MINC_LIB_DIR /usr/local/freesurfer/mni/lib
> PERL5LIB
> /usr/local/freesurfer/mni/lib/../System/Library/Perl/5.8.6:/sw/l
> ib/perl5:/sw/lib/perl5/darwin
> GSL_DIR /usr/local/freesurfer/lib/gsl
> TCLLIBPATH /usr/local/freesurfer/lib/tcltktixblt/lib
> MISC_LIB /usr/local/freesurfer/lib/misc/lib
> FSL_DIR /usr/local/freesurfer/fsl
>
> Marc-Yelles-Computer 1% echo $FSLDIR
> /usr/local/fsl
>
> Marc-Yelles-Computer 2% fsl
> Error in startup script: no suitable image found. Did find:
> /usr/local/freesurfer/lib/tcltktixblt/lib/libtix8.1.8.4.a: unknown
> file
> type, first eight bytes: 0x21 0x3C 0x61 0x72 0x63 0x68 0x3E 0x0A
> /usr/local/freesurfer/lib/tcltktixblt/lib/libtix8.1.8.4.a: unknown
> file
> type, first eight bytes: 0x21 0x3C 0x61 0x72 0x63 0x68 0x3E 0x0A
> while executing
> "load /usr/local/freesurfer/lib/tcltktixblt/lib/libtix8.1.8.4.a Tix"
> ("package ifneeded" script)
> invoked from within
> "package require Tix"
> invoked from within
> "if { [ info exists env(TCLTKSHELL) ] && $env(TCLTKSHELL) == "wish" } {
> package require Tk
> package require Tix
> tix configure -scheme TixGr..."
> (file "/usr/local/fsl/tcl/fslstart.tcl" line 3)
> invoked from within
> "source [ file dirname [ info script ] ]/fslstart.tcl"
> (file "/usr/local/fsl/tcl/fsl.tcl" line 71)
> invoked from within
> "source ${FSLDIR}/tcl/${origname}.tcl"
> (file "/usr/local/fsl/bin/fsl" line 21
>
>
> I tinkered with the setupfreesurfer.csh and the freesurferenv.csh files and
> got it to list FSL_DIR as usr/local/fsl but the program still wouldn't work.
>
> If I comment out the two freesurfer lines in my .cshrc file, fsl works
> perfectly once again. My only guess is that there is a problem with both
> fsl and freesurfer having tktcl libraries. But my understanding of UNIX,
> etc is somewhat limited. Below I have also attached my .cshrc :
>
> #!/bin/tcsh
> set path = (/usr/X11R6/bin $path /sw/sbin /sw/bin /Users/marcyelle/bin)
> set prompt="`hostname -s` \!% "
> source /sw/bin/init.csh
> source /usr/local/rsi/idl_5.6/bin/idl_setup
> setenv IDL_PATH "<IDL_DEFAULT>:+/usr/local/rsi/idl_5.6/local_lib"
> setenv FREESURFER_HOME /usr/local/freesurfer
> source $FREESURFER_HOME/SetUpFreeSurfer.csh
> setenv FSLDIR /usr/local/fsl
> source ${FSLDIR}/etc/fslconf/fsl.csh
> setenv PATH ${FSLDIR}/bin:${PATH}
> unsetenv LANG
>
>
> Thank you in advance for your assistance, I need it! Sorry for the long
> email, I simply wanted to give you as much info as I could. Take care.
>
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