Control: reassign -1 src:gdcm 2.8.7-2

2018-11-23 Thread Mathieu Malaterre
> This is a diff of a .symbols file I generated from libvtkgdcm2.8 > versions 2.8.7-1 and 2.8.7-2. Thanks Mattia for tracking this issue ! As you've noticed the ABI breakage occur in between two minor uploads -1 and -2. So I suspect this may confuse reader that bug be reported against src:gdcm, s

Re: Control: reassign -1 src:gdcm 2.8.7-2

2018-11-23 Thread Mathieu Malaterre
On Fri, Nov 23, 2018 at 12:04 PM Mattia Rizzolo wrote: > > On Fri, Nov 23, 2018 at 11:41:10AM +0100, Mathieu Malaterre wrote: > > As you've noticed the ABI breakage occur in between two minor uploads > > -1 and -2. So I suspect this may confuse reader that bug be report

orthanc/0.2.1-3 preparation

2012-11-15 Thread Mathieu Malaterre
Hi Sébastien, Before you do anything, please have a look at the current state of orthanc in debian buildd machines: https://buildd.debian.org/status/package.php?p=orthanc Thanks ! On Thu, Nov 15, 2012 at 10:45 AM, Sebastien Jodogne wrote: > Dear Andreas and Mathieu, > > The Orthanc 0.2.2-1 p

refdb in debian

2012-11-18 Thread Mathieu Malaterre
Hi all, [Sorry for the cross posting] I am very pleased to announce that refdb has been accepted in debian: http://packages.qa.debian.org/r/refdb/news/20121117T110005Z.html RefDB is a reference database and bibliography tool for SGML, XML, and LaTeX/BibTeX documents. It allows users to sh

RefDB in debian (aka #135746)

2012-11-20 Thread Mathieu Malaterre
Dear all, RefDB has been accepted into debian. I uploaded it into experimental because I only use refdb from XML (docbook), while the tool allow a much broader usage (latex, mysql...). So if you were using RefDB in the past, please let me know if I missed anything. Thanks much in advance, -M

Re: Packaging InVesalius

2012-12-07 Thread Mathieu Malaterre
Hi, On Fri, Dec 7, 2012 at 2:52 PM, Thiago Franco Moraes wrote: > I have the following question: How can I add a file (Makefile in my > case) when doing the package? I was thinking in add the Makefile in > the debian folder and put in debian/rules file a command to move the > Makefile to the sour

Re: Orthanc 0.4.0

2012-12-17 Thread Mathieu Malaterre
Uploaded. Thanks. On Mon, Dec 17, 2012 at 10:58 AM, Sebastien Jodogne wrote: > Dear all, > > I have just updated the DebianMed repository with the newest upstream > version of Orthanc (0.4.0) [1]. Please would you kindly upload it to > experimental? Thanks in advance! > > Cheers, > Sébastien- >

Re: Orthanc 0.5.0

2013-01-31 Thread Mathieu Malaterre
Salut Sébastien, what does this new version brings/fixes ? does it fixes current FTBFS ref: https://buildd.debian.org/status/package.php?p=orthanc thanks On Thu, Jan 31, 2013 at 3:56 PM, Sebastien Jodogne wrote: > Dear all, > > I have just updated the DebianMed repository with the newest ups

Re: Orthanc 0.5.0

2013-01-31 Thread Mathieu Malaterre
As a side note, you cannot leave this ... orthanc (0.4.0-2) UNRELEASED; urgency=low ... You'll need to use dch next time. HTH On Thu, Jan 31, 2013 at 4:12 PM, Mathieu Malaterre wrote: > Salut Sébastien, > > what does this new version brings/fixes ? does it fixes current FTBFS

Re: Orthanc 0.5.0

2013-01-31 Thread Mathieu Malaterre
On Thu, Jan 31, 2013 at 5:34 PM, Sebastien Jodogne wrote: > Is there a way to subscribe by mail to the addition of new bugs relative > only to Orthanc? It does not seem possible in the interface. Simply go there: http://packages.qa.debian.org/o/orthanc.html Scroll to the bottom left and enter y

Re: cellprofiler

2013-02-24 Thread Mathieu Malaterre
Hi Ivo ! If you are still interested in cellprofiler and ready to go through the python-libtiff stuff. Please assign the -closed- RFP back to you: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=647995#33 I am not interested in this package for the time being. Do you also want to maintai

Re: itk and tiff

2013-03-20 Thread Mathieu Malaterre
On Wed, Mar 20, 2013 at 5:23 AM, Steve M. Robbins wrote: > On March 19, 2013 09:48:15 AM Paul Novotny wrote: >> On Mon, 2013-03-18 at 00:56 -0500, Steve M. Robbins wrote: > >> > So I turned on system tiff, added your patch, and updated the >> > build depends. Depending on libtiff5-dev failed due

Re: Ginkgo-CADx compilation problem form Debian package

2013-04-11 Thread Mathieu Malaterre
I would use the latest package of dcmtk. It will pull in the missing shared libs. On Thu, Apr 11, 2013 at 10:43 AM, Sebastian Hilbert wrote: > Hi, > > > > I saw that Ginkgo-CADx is packaged in experimental. I tried to compile it > for Ubuntu 12.10 locally (dget -xu, debuild -B) and get the follow

Re: Ginkgo-CADx compilation problem form Debian package

2013-04-11 Thread Mathieu Malaterre
On Thu, Apr 11, 2013 at 10:50 AM, Sebastian Hilbert wrote: > Am Donnerstag, 11. April 2013, 10:45:33 schrieb Mathieu Malaterre: > >> I would use the latest package of dcmtk. It will pull in the missing > >> shared libs. > >> > > > > It might have to do wi

Re: Ginkgo-CADx compilation problem form Debian package

2013-04-11 Thread Mathieu Malaterre
On Thu, Apr 11, 2013 at 10:55 AM, Sebastian Hilbert wrote: > Am Donnerstag, 11. April 2013, 10:45:33 schrieb Mathieu Malaterre: > >> I would use the latest package of dcmtk. It will pull in the missing > >> shared libs. > >> > > > > Would you consi

Re: Ginkgo-CADx compilation problem form Debian package

2013-04-11 Thread Mathieu Malaterre
On Thu, Apr 11, 2013 at 11:07 AM, Andreas Tille wrote: > On Thu, Apr 11, 2013 at 10:52:32AM +0200, Mathieu Malaterre wrote: >> > It might have to do with this bug >> > >> > http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=677721 >> >> Exactly ! (well it&

Re: Apache clinical Text Analysis and Knowledge Extraction System (cTAKES)

2013-04-11 Thread Mathieu Malaterre
Good luck with maven/java... See 693234#23 On Thu, Apr 11, 2013 at 8:55 AM, Andreas Tille wrote: > Hi, > > just for your interest: > >https://ctakes.apache.org/ > > If somebody might take the challenge to spend some time into it to see > whether we can package this project it would be nice. >

Re: GNU health arrived [ftpmas...@ftp-master.debian.org: gnuhealth_1.8.0-1_amd64.changes ACCEPTED into experimental, experimental]

2013-04-19 Thread Mathieu Malaterre
Off topic, but I stumble on: http://ith-icoserve.com/ this morning, which really reminded of first image from http://health.gnu.org/ (http://blog.gnusolidario.org/2013/03/we-are-proud-to-invite-you-gnu-health.html) On Fri, Apr 19, 2013 at 9:30 AM, Andreas Tille wrote: > Hi, > > the next step woul

Re: Orthanc 0.5.2

2013-05-10 Thread Mathieu Malaterre
At least on two of my machine I am getting: [ 58%] Building CXX object CMakeFiles/CoreLibrary.dir/Core/Lua/LuaFunctionCall.cpp.o /usr/bin/c++ -DORTHANC_VERSION=\"0.5.2\" -D_LARGEFILE64_SOURCE=1 -D_FILE_OFFSET_BITS=64 -DORTHANC_STATIC=0 -DORTHANC_SSL_ENABLED=1 -DBOOST_HAS_FILESYSTEM_V3=1 -DBOOST_

Re: Orthanc 0.5.2

2013-05-13 Thread Mathieu Malaterre
On Sat, May 11, 2013 at 12:10 PM, wrote: > [1] http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=695826 Thanks, I could not find the bug report. I will upload orthanc with explicit reference to boost1.53, as explained in #708109. I'd appreciate if you could use DEP3 for patches, and I believe -

Re: Fwd: Flexbar 32-bit builds and SeqAn 1.4

2013-06-13 Thread Mathieu Malaterre
On Thu, Jun 13, 2013 at 1:19 PM, Andreas Tille wrote: > Hi Tony, > > On Thu, Jun 13, 2013 at 10:19:37AM +0100, Tony Travis wrote: >> Hi, Andreas. >> >> Johannes has asked me about 32-bit support for Flexbar. >> >> AFAIK, 32-bit support for tbb would be provided automatically by a tbb >> dependency

Re: Fwd: Flexbar 32-bit builds and SeqAn 1.4

2013-06-13 Thread Mathieu Malaterre
On Thu, Jun 13, 2013 at 1:53 PM, Andreas Tille wrote: > Hi Mathieu, > > On Thu, Jun 13, 2013 at 01:39:18PM +0200, Mathieu Malaterre wrote: >> On Thu, Jun 13, 2013 at 1:19 PM, Andreas Tille wrote: >> $ cat flexbar/trunk/debian/control >> [...] >> Architecture

Re: Data Licensing

2013-06-18 Thread Mathieu Malaterre
Just my two cents, GPL and/or LGPL are mostly related to code (notion of 'shared' lib). I would either check one of our french license CeCILL A/B/C or maybe creative commons which are more oriented with data stuff. On Tue, Jun 18, 2013 at 4:58 PM, Eric Maeker wrote: > Hi all, > > I'm working on

Re: Data Licensing

2013-06-18 Thread Mathieu Malaterre
On Tue, Jun 18, 2013 at 5:39 PM, Eric Maeker wrote: > > Le 18 juin 2013 à 17:34, Mathieu Malaterre a écrit : > >> Just my two cents, GPL and/or LGPL are mostly related to code (notion >> of 'shared' lib). I would either check one of our french license >> C

Re: Imaging experts opinion wanted: Should we keep ctn?

2013-07-16 Thread Mathieu Malaterre
On Tue, Jul 16, 2013 at 9:04 AM, Andreas Tille wrote: > I remember that I had a hard time when I updated ctn the last time which > was five years ago. Upstream did not even issued a new version since > ten years. So I wonder what you might think about ctn: Should I simply > update the package t

Re: Orthanc 0.6.0

2013-07-17 Thread Mathieu Malaterre
Hi, On Wed, Jul 17, 2013 at 12:47 PM, Sebastien Jodogne wrote: > http://anonscm.debian.org/viewvc/debian-med/trunk/packages/orthanc/trunk/debian/ Your d/changelog looks corrupted, I do not believe you can close two bugs with this syntax. You should not required boost 1.53 explicitely anymore AF

Re: Orthanc 0.6.0

2013-07-17 Thread Mathieu Malaterre
On Wed, Jul 17, 2013 at 1:15 PM, Sebastien Jodogne wrote: > Hi Mathieu, > >> On Wed, Jul 17, 2013 at 12:47 PM, Sebastien Jodogne >> wrote: >>> >>> >>> http://anonscm.debian.org/viewvc/debian-med/trunk/packages/orthanc/trunk/debian/ >> >> >> Your d/changelog looks corrupted, I do not believe you c

Re: Orthanc 0.6.1

2013-09-16 Thread Mathieu Malaterre
Dear Sébastien, Would you care explaining why you reverted my change. I did document in svn rev 14174 what I did. Furthermore to prevent anyone from reverting it, I took additional steps and even left the comment: "remove build type, see #711515" thanks, On Mon, Sep 16, 2013 at 3:44 PM, Seba

Re: DCM4CHE -- could someone update on the status?

2013-10-14 Thread Mathieu Malaterre
On Mon, Oct 14, 2013 at 9:30 PM, Yaroslav Halchenko wrote: > > On Mon, 14 Oct 2013, Andreas Tille wrote: >> > - there are few subprojects listed in >> > http://debian-med.alioth.debian.org/tasks/imaging >> > with some packaging specified as available > >> svn://svn.debian.org/debian-med/trunk/

Re: Orthanc 0.6.2 - Review needed for "Orthanc Client"

2013-10-16 Thread Mathieu Malaterre
On Wed, Oct 16, 2013 at 2:22 PM, Andreas Tille wrote: > Hi Sebastien, > > On Wed, Oct 16, 2013 at 01:34:53PM +0200, Sebastien Jodogne wrote: >> >I have no idea how to really test the binary packages but I surely can >> >verify whether the package builds or not and finally upload if it looks >> >OK

Re: Orthanc 0.6.2 - Review needed for "Orthanc Client"

2013-10-16 Thread Mathieu Malaterre
On Wed, Oct 16, 2013 at 2:44 PM, Sebastien Jodogne wrote: > Hi Matthieu, > >>> OK. I did so and it is great that you did document this in >>> README.Debian which is very helpful for users starting with a package. >> >> >> >> http://anonscm.debian.org/viewvc/debian-med/trunk/packages/orthanc/trunk

Re: Advent calendar

2013-11-28 Thread Mathieu Malaterre
On Thu, Nov 28, 2013 at 8:27 AM, Emmanuel Promayon wrote: > Hi everyone, > >>> Furthermore I would like to mention another page[3] with lots of >>> information >>> about Debian Med packages. Besides the list of RC bugs you can also >>> see packages that can not be built on a Debian architecture, >

Re: Advent calendar

2013-11-28 Thread Mathieu Malaterre
On Thu, Nov 28, 2013 at 8:27 AM, Emmanuel Promayon wrote: > For instance the CamiTK package depends on huge libs such as qt, vtk, > insighttoolkit and gdcm. When is the best time to try a transition to Qt5, > Vtk6, itk4 and gdcm2.4? This is a long debate ;) Technically this is up to the maintain

Re: Introducing myself - conquest

2014-01-26 Thread Mathieu Malaterre
Hi, On 1/26/14, Pablo Lorenzzoni wrote: > My name is Pablo Lorenzzoni. I am currently using ConQuest DICOM server and > would be happy to package it for Debian. > > I've seen previous works on the package (and the SVN tree), and bug 680352. > I > contacted previous maint

Re: Introducing myself - conquest

2014-01-27 Thread Mathieu Malaterre
On Sun, Jan 26, 2014 at 11:21 PM, Karsten Hilbert wrote: > On Sun, Jan 26, 2014 at 10:00:49AM -0200, Pablo Lorenzzoni wrote: > >> My name is Pablo Lorenzzoni. I am currently using ConQuest DICOM server and >> would be happy to package it for Debian. > > May I kindly suggest -- if there's a choice

Re: Introducing myself - conquest

2014-01-27 Thread Mathieu Malaterre
On Mon, Jan 27, 2014 at 11:03 AM, Karsten Hilbert wrote: > On Mon, Jan 27, 2014 at 07:02:32AM -0200, Pablo Lorenzzoni wrote: > >> > BTW DCMTK has been compiled and tested with hardening flags and proven >> > to work very well, it is a very robust and mature SCP server. >> >> Sure... right now anyo

Re: Aw: Re: Next sprint proposal

2014-02-10 Thread Mathieu Malaterre
Nothing too unusual for Brittany: http://www.ouest-france.fr/grande-maree-saint-malo-bien-secouee-mais-pas-de-blesse-1900920 ;-P On Mon, Feb 10, 2014 at 12:13 PM, Jorge Sebastião Soares wrote: > Hi guys, > > Saint Malo looks great. > As long as it doesn't disappear of the map like what's happen

Re: Problem with bug #731823

2014-03-31 Thread Mathieu Malaterre
On Mon, Mar 31, 2014 at 7:25 AM, Emmanuel Promayon wrote: > Mathieu, can you confirm this is ok, and maybe close the bug? Present in testing (jessie): https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=731823#32 This need to be fixed. -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debia

Re: Problem with bug #731823

2014-04-02 Thread Mathieu Malaterre
On Wed, Apr 2, 2014 at 10:20 AM, Emmanuel Promayon wrote: > Hello all, > > >> Present in testing (jessie): >> >> https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=731823#32 >> >> This need to be fixed. > > > Thanks for the clarification Mathieu. Concretely what can be done to help > fixing this? >

status of libics

2014-05-29 Thread Mathieu Malaterre
Andreas, Could you please give us a hint on the libics status ? Thanks much -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/ca+7wusw3bthtqhopqtgbqog0hputkdf-h-xrd

vtk6 transition should be on hold

2014-06-02 Thread Mathieu Malaterre
Anton, With all due respect, I think you are pusing too hard on vtk6 transition. I may be very biased but for example support for VTK6 was pushed in GDCM only weeks ago. I do not believe that *forcing* for vtk6 transition will help people move gracefully from one API to the new one. The step

Re: Packing of Fw4spl

2014-08-22 Thread Mathieu Malaterre
On Tue, Aug 19, 2014 at 5:12 PM, Andreas Tille wrote: > Hi Corentin, > > On Tue, Aug 19, 2014 at 04:27:13PM +0200, Corentin DESFARGES wrote: >> >> VXL (which is obsolete and contains VGL, V3P, VCL...) >> > Could you please be a bit more verbose? According to SourceForge >> the version in Debian (

Gimias status

2014-12-15 Thread Mathieu Malaterre
[CC me please] Does anyone knows what happen to gimias in Debian ? I see some interest in the past: https://wiki.debian.org/DebianMed/Meeting/Southport2012 but nothing since... Thx for updates, -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe".

Resignation from the debian-med/debian-science maintainer team

2014-12-24 Thread Mathieu Malaterre
Hi, I hereby resign from both the debian-science and debian-med maintainer team in Debian. I am not able to produce any good work within those teams, so remove me from the Uploaders field on next upload. Thanks. Happy holidays, -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org wi

Re: Resignation from the debian-med/debian-science maintainer team

2015-01-20 Thread Mathieu Malaterre
[All the following only reflect my sole opinion based on my limited contribution to Debian, and may not even reflect the reality.] On Wed, Dec 24, 2014 at 10:21 AM, Mathieu Malaterre wrote: > Hi, > > I hereby resign from both the debian-science and debian-med maintainer > team in De

Re: Re: igraph / R-interface

2009-09-17 Thread Mathieu Malaterre
On Thu, Sep 17, 2009 at 4:01 PM, Gábor Csárdi wrote: >>> Why tweak it? Why isn't the included library good? >> >> Because I use libigraph with external blas / lapack and lots of >> options which are not the one used in the r interface. > > You can build the shared library in the R package with ext

Re: Fwd: igraph debian/* files

2009-09-18 Thread Mathieu Malaterre
On Thu, Sep 17, 2009 at 12:01 PM, Andreas Tille wrote: > On Wed, Sep 16, 2009 at 05:58:01PM +0200, Mathieu Malaterre wrote: >> Thanks for sponsor, > > I noticed that the dh_movefiles target in debian/rules was wrong and > thus the packages remained empty.  This is fixed now.

Status of libjpeg7

2009-09-18 Thread Mathieu Malaterre
Hi Bill, What are the transition plan for libjpeg7 ? There are -at least- two packages that I know of which link to libjpeg62: VTK & ITK ? Should we update the package control file ? Or is there something else being prepared (like a libjpeg-default package). Thanks, -- Mathieu -- To UNSUBSC

jmdns -- java implementation of multi-cast DNS (Apple Rendezvous)

2009-09-18 Thread Mathieu Malaterre
Hi there, In order to package pixelmed (Bug#547184), I need to package JmDNS (#486697). Because I could nor find it neither get in touch with upstream, I decided to package it up (still things to do). My issue is that it does not really belong to debian-med so I'd prefer put it outside of debi

Re: Status of libjpeg7

2009-09-18 Thread Mathieu Malaterre
On Fri, Sep 18, 2009 at 3:00 PM, Bill Allombert wrote: > On Fri, Sep 18, 2009 at 02:16:22PM +0200, Mathieu Malaterre wrote: >> Hi Bill, >> >>   What are the transition plan for libjpeg7 ? There are -at least- two >> packages that I know of which link to libjpeg62: VTK

gdcm: No rule to make target `/usr/lib/jvm/default-java/lib/libjawt.so', needed by `bin/libvtkgdcmJava.so'. Stop.

2009-09-22 Thread Mathieu Malaterre
For reason beyond my understanding, I am still getting the same error on armel (it disappear on powerpc) https://buildd.debian.org/~luk/status/package.php?p=gdcm [ 88%] Building CXX object Utilities/VTK/CMakeFiles/vtkgdcmJava.dir/vtkGDCMThreadedImageReader2Java.cxx.o make[3]: *** No rule to make

Re: gdcm: No rule to make target `/usr/lib/jvm/default-java/lib/libjawt.so', needed by `bin/libvtkgdcmJava.so'. Stop.

2009-09-22 Thread Mathieu Malaterre
On Tue, Sep 22, 2009 at 10:42 PM, Dominique Belhachemi wrote: > Hi Mathieu, > > On Tue, 2009-09-22 at 22:31 +0200, Mathieu Malaterre wrote: >> For reason beyond my understanding, I am still getting the same error >> on armel (it disappear on powerpc) >> >> http

Re: thanks and a question

2009-09-28 Thread Mathieu Malaterre
Hi mitchell, Sorry to hear your misfortune with ctn. did you report any of the bugs you mentionned ? Are they easily reproducable ? Thanks, On Thu, Sep 24, 2009 at 3:38 PM, m laks wrote: Mathieu, I am a great fan of debian (i use it on over 50 pcs in my department and home and my parents a

python-numarray (was Re: [med-svn] r4040 - trunk/packages/insighttoolkit/trunk/debian)

2009-09-28 Thread Mathieu Malaterre
Steve, Did you try with python-numpy ? If this did not worked did you keep the build log ? Thanks, On Sat, Sep 26, 2009 at 7:08 PM, Steven Michael Robbins wrote: > Author: smr > Date: 2009-09-26 17:08:46 + (Sat, 26 Sep 2009) > New Revision: 4040 > > Modified: >   trunk/packages/insighttoo

Re: Python: Numeric vs NumArray vs Numpy (itkPyBuffer)

2009-09-29 Thread Mathieu Malaterre
Steve, 2009/9/29 Gaëtan Lehmann : > > Le 29 sept. 09 à 09:27, Mathieu Malaterre a écrit : > >> Hi there, >> >>  I am reading through the code of itkPyBuffer and found: >> >> $ cat Wrapping/WrapITK/ExternalProjects/PyBuffer/itkPyBuffer.txx >> ... &g

Re: thanks and a question

2009-09-29 Thread Mathieu Malaterre
hard to do as I dont know it so much. (maybe something in perl would > make me more adventurous). > > On the other hand I wondered if you had any info from other users or personal > experience. > > Mitchell > > > --- On Mon, 9/28/09, Mathieu Malaterre wrote: > &g

ITP: VXL

2009-09-29 Thread Mathieu Malaterre
Hi there, In the mid-term I'd like to package VXL (for FARSIGHT project), see current status: https://gdcm.svn.sourceforge.net/svnroot/gdcm/Sandbox/debian-med/vxl In the long term this means ITK will be able to use a system VXL. Cheers, -- Mathieu -- To UNSUBSCRIBE, email to debian-med-

VXL: as part of Debian Med ?

2009-09-30 Thread Mathieu Malaterre
Hi there, I'd like to add VXL as part of Debian Med. A large portion is included in ITK as convenient libraries and I tested it, I can use a system installed VXL to build ITK. I uploaded it on mentors: http://mentors.debian.net/debian/pool/main/v/vxl/ I also unarchive/reopen/ and change ow

Re: VXL: as part of Debian Med ?

2009-09-30 Thread Mathieu Malaterre
On Wed, Sep 30, 2009 at 4:09 PM, Andreas Tille wrote: > On Wed, Sep 30, 2009 at 03:52:41PM +0200, Mathieu Malaterre wrote: >>   I'd like to add VXL as part of Debian Med. A large portion is >> included in ITK as convenient libraries and I tested it, I can use a >> sys

Re: VXL: as part of Debian Med ?

2009-09-30 Thread Mathieu Malaterre
On Wed, Sep 30, 2009 at 4:44 PM, Andreas Tille wrote: > On Wed, Sep 30, 2009 at 04:20:12PM +0200, Mathieu Malaterre wrote: >> Done, I was just waiting for the green light :) > > The green light was given when you've got write permissions to the > SVN repository. ;-) > Th

GDCM not entering testing (fsl ?)

2009-09-30 Thread Mathieu Malaterre
hi there, Quick question, is this correct that GDCM is not entering testing because of fsl: Ref: http://release.debian.org/migration/testing.pl?package=gdcm Thanks, -- Mathieu -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contac

Re: VXL: as part of Debian Med ?

2009-10-01 Thread Mathieu Malaterre
On Thu, Oct 1, 2009 at 5:44 AM, Steve M. Robbins wrote: > On Wed, Sep 30, 2009 at 04:20:12PM +0200, Mathieu Malaterre wrote: > >> In the meantime, I'll patch ITK package in trunk (Steve I hope you >> don't mind). > > Please don't change ITK to build with &

VTK 5.4 package with boost-parallel

2009-10-01 Thread Mathieu Malaterre
This is a follow up on: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=549203 Once the boost graph parallel package will be uploaded, one will be able to compile VTK 5.4 taking advantage of the new Titan toolkit (*). Packaging file can be found here: http://gdcm.svn.sourceforge.net/svnroot/gdc

Re: [med-svn] r4096 - trunk/packages/vxl/trunk/debian

2009-10-03 Thread Mathieu Malaterre
On Wed, Sep 30, 2009 at 9:01 PM, Andreas Tille wrote: > On Wed, Sep 30, 2009 at 02:55:04PM +0000, Mathieu Malaterre wrote: >> +common-build-arch:: >> +     echo "$(pkg_lib): package-name-doesnt-match-sonames" > >> debian/$(pkg_lib).lintian-overrides >>

clean target (was: igraph debian/* files)

2009-10-05 Thread Mathieu Malaterre
On Fri, Sep 18, 2009 at 11:12 AM, Andreas Tille wrote: <...> > debuild > fakeroot debian/rules clean Here is what I get: $ fakeroot debian/rules clean dh_testdir dh_testroot rm -f build-stamp configure-stamp [ ! -f Makefile ] || /usr/bin/make distclean make[1]: Entering directory `/home/mathieu/

dicomscope ready for upload

2009-10-05 Thread Mathieu Malaterre
Hi there, On Fri, Sep 4, 2009 at 2:10 PM, Mathieu Malaterre wrote: > On Fri, Sep 4, 2009 at 1:04 PM, Andreas Tille wrote: >> On Fri, Sep 04, 2009 at 12:42:46PM +0200, Mathieu Malaterre wrote: >>>   I am continuing the cleanup of dicomscope, but I am getting some >>>

Re: dicomscope ready for upload

2009-10-05 Thread Mathieu Malaterre
On Mon, Oct 5, 2009 at 3:25 PM, Andreas Tille wrote: > On Mon, Oct 05, 2009 at 12:51:20PM +0200, Mathieu Malaterre wrote: >> Hi there, >> >> > The package is now lintian clean :) Please consider for upload. >> >> I believe dicomscope is ready for upload. >

vxl ready for upload

2009-10-08 Thread Mathieu Malaterre
I haven't been very lucky with my previous packaging, but I'd like again anyway. I believe the package for vxl is ready for upload. I did carefully check the copyright file this time. Thanks for your time, -- Mathieu -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subj

Re: dicomscope ready for upload

2009-10-09 Thread Mathieu Malaterre
Hi Jörg/Marco, We are having some issue on the packaging of DICOMScope. I thought I could redistribute it under the following license: http://svn.debian.org/wsvn/debian-med/trunk/packages/dicomscope/trunk/debian/copyright But upon inspection, Charles discover this is not as clear as it seems

Fwd: dicomscope ready for upload

2009-10-14 Thread Mathieu Malaterre
Forwarding on debian-med -- Forwarded message -- From: OFFIS DICOM Team <> Date: Wed, Oct 14, 2009 at 2:53 PM Subject: Re: dicomscope ready for upload To: Mathieu Malaterre <> Cc: Charles Plessy <>, Klaus Kleber <> Hi Mathieu, sorry for the late reply .

License/Copyright issues (was Re: dicomscope ready for upload)

2009-10-19 Thread Mathieu Malaterre
Charles, Do you consider this is ok then ? Looking at the C++ code however, this is not clear that DCMTK copyright applies: $ head -n 35 interface/libsrc/DSRWaveformValue.cpp /* * * Copyright (C) 2000-2003, OFFIS and Institute for MicroTherapy * * This software and supporting documentatio

Re: License/Copyright issues (was Re: dicomscope ready for upload)

2009-10-19 Thread Mathieu Malaterre
On Mon, Oct 19, 2009 at 4:43 PM, Charles Plessy wrote: > Le Mon, Oct 19, 2009 at 12:38:30PM +0200, Mathieu Malaterre a écrit : >> Charles, >> >>   Do you consider this is ok then ? Looking at the C++ code however, >> this is not clear that DCMTK copyright applies: >

Re: dicomscope ready for upload

2009-10-26 Thread Mathieu Malaterre
for upload > Datum: Wed, 21 Oct 2009 15:02:26 +0200 > Von: OFFIS DICOM Team > An: Charles Plessy > CC: Mathieu Malaterre ,  Klaus Kleber > > > Dear Charles, > >> thank you for pointing us at the identity of the C/C++ part of DICOMscope >> with >> DCMTK. Sin

gdcm / transitive linking

2009-10-28 Thread Mathieu Malaterre
Steve, I fixed the issue of transitive linking in GDCM. So next time you do an upload we can work together to revert all the Build-Depends stuff you had to add just to be able to link GDCM (technically we should be back to original state before the USE_SYSTEM_GDCM option). Cheers -- Mathieu

Re: [Insight-users] ITK 3.16 Packages for Ubuntu Karmic Koala (9.10)

2009-11-02 Thread Mathieu Malaterre
Steve, If you have been reading this thread, what is your point of view ? Do you think you can move to ITK/WrapITK (this would solve the numpy vs numarray issue as a side effect) ? thanks, 2009/11/2 Gaëtan Lehmann : > > Le 2 nov. 09 à 09:16, Mathieu Malaterre a écrit : > >> Lu

Re: [Insight-users] ITK 3.16 Packages for Ubuntu Karmic Koala (9.10)

2009-11-02 Thread Mathieu Malaterre
BTW, I cannot build ITK+CSwig+Tcl8.5 anymore. I'll check if switching to wrapitk work around the compilation issue with Tk_PhotoSetSize within cswig code. cheers On Mon, Nov 2, 2009 at 9:50 AM, Mathieu Malaterre wrote: > Steve, > >  If you have been reading this thread, what is

debian-watch-file-in-native-package

2009-11-07 Thread Mathieu Malaterre
Hi, I am looking at the following lintian warning: http://lintian.debian.org/maintainer/debian-med-packag...@lists.alioth.debian.org.html#gdcm but I do not understand why GDCM is now considered a native debian package. I could not figure out what I did ... Thanks for suggestion, -- Mathieu

Re: debian-watch-file-in-native-package

2009-11-07 Thread Mathieu Malaterre
On Sat, Nov 7, 2009 at 4:13 PM, David Paleino wrote: > Mathieu Malaterre wrote: > >> Hi, > > Hello Mathieu, > >>   I am looking at the following lintian warning: >> >> http://lintian.debian.org/maintainer/debian-med- > packag...@lists.alioth.debian.org

Re: debian-watch-file-in-native-package

2009-11-08 Thread Mathieu Malaterre
David, On Sat, Nov 7, 2009 at 7:06 PM, David Paleino wrote: > No need to CC me, thanks :) > Even if I'm not (anymore) active in the team, I follow the mailinglist, > hoping I can find something I would be useful to. > > Mathieu Malaterre wrote: > >> On Sat, Nov 7, 2

Re: debian-watch-file-in-native-package

2009-11-12 Thread Mathieu Malaterre
On Sun, Nov 8, 2009 at 11:40 PM, Steve M. Robbins wrote: > Hi Mathieu, > > On Sun, Nov 08, 2009 at 07:55:23PM +0100, Mathieu Malaterre wrote: > >> >> On Sat, Nov 7, 2009 at 4:13 PM, David Paleino wrote: >> >>> I suggest you to correctly re-upload your pa

dicomscope ready for upload (2)

2009-11-16 Thread Mathieu Malaterre
Hi there, I have updated the dicomscope package to reflect the copyright clarification done upstream. If anyone could review it I'd appreciate ! Thanks, -- Mathieu -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@li

PixelMed ready for upload

2009-11-21 Thread Mathieu Malaterre
Hi there, If anyone wants to review pixelmed, I believe it is now ready for upload. This package is a DICOM implementation in Java by D. Clunie. It comes with a DICOM Image Viewer and a ECG Viewer. There is also a DICOM Validator for the Enhanced CT/MR Image Storage objects. Cheers ! -- Mathie

Re: PixelMed ready for upload

2009-11-23 Thread Mathieu Malaterre
On Mon, Nov 23, 2009 at 9:24 AM, Andreas Tille wrote: > On Sat, Nov 21, 2009 at 11:08:59PM +0100, Mathieu Malaterre wrote: >>   If anyone wants to review pixelmed, I believe it is now ready for >> upload. This package is a DICOM implementation in Java by D. Clunie. >> It com

igraph ready for upload

2009-11-23 Thread Mathieu Malaterre
Hi there, I believe igraph is now ready for debian upload. I have been working closely with upstream to get this package ready (Thanks to Gábor & Tamas for their work). To get the source code, you need to use: make -f ./debian/rules get-orig-source Cheers, -- Mathieu -- To UNSUBSCRIBE, em

Re: igraph ready for upload

2009-11-23 Thread Mathieu Malaterre
On Mon, Nov 23, 2009 at 4:20 PM, Andreas Tille wrote: > On Mon, Nov 23, 2009 at 12:10:19PM +0100, Mathieu Malaterre wrote: >>   To get the source code, you need to use: make -f ./debian/rules >> get-orig-source > > I can give it a try but please note that it is just tagged

Update on WrapITK and debian

2009-11-23 Thread Mathieu Malaterre
Steve, I thought I should give an update. I have been trying for the past weeks to get WrapITK working without Review. I have to admit I never succeeded (see all my attempt commented out in the patch file). I do not say it is not possible, I am saying this is really hard. Instead I have simp

Re: Update on WrapITK and debian

2009-11-24 Thread Mathieu Malaterre
On Tue, Nov 24, 2009 at 8:09 AM, Steve M. Robbins wrote: > On Mon, Nov 23, 2009 at 06:45:06PM +0100, Mathieu Malaterre wrote: >> Steve, >> >>   I thought I should give an update. >>   I have been trying for the past weeks to get WrapITK working without >> Review.

Fwd: [Insight-users] Fedora-RHEL packages: Status of "Patented" and "Review" directories

2009-12-02 Thread Mathieu Malaterre
Just FYI -- Forwarded message -- From: Luis Ibanez Date: Wed, Dec 2, 2009 at 10:32 PM Subject: Re: [Insight-users] Fedora-RHEL packages: Status of "Patented" and "Review" directories To: Mario Ceresa Cc: insight-us...@itk.org Hi Mario, Thanks a lot for your efforts on packag

Re: Dcmtk in Group maintenance

2009-12-03 Thread Mathieu Malaterre
Hi Andreas, On Thu, Dec 3, 2009 at 9:11 AM, Andreas Tille wrote: > Hi, > > I just uploaded a lintian clean package of dcmtk which is compliant to > our policy which is using quilt patches exclusively.  While there is > one minor problem if you build with debuild twice in a row you get some > chan

Pending upload: dicomscope / pixelmed

2009-12-14 Thread Mathieu Malaterre
Hi, Does anyone knows if there is something particular going on with NEW package ? dicomscope/pixelmed have not been uploaded (submitted ~3 weeks ago). http://qa.debian.org/developer.php?login=debian-med-packag...@lists.alioth.debian.org#pending%20uploads Thanks, -- Mathieu -- To UNSUBSCR

Re: dicomscope_3.6.0-1_i386.changes REJECTED

2009-12-17 Thread Mathieu Malaterre
I thought the situation for the pdf was ok (andreas could you confirm?). We described what they are in : $ cat doc-base.dscs $ cat doc-base.dsum As for the .lut file. Those are DICOM files: $ dcmdump dicomscope-3.6.0/DICOMscope/lut/philips256us.lut # Dicom-File-Format # Dicom-Meta-Information

Fwd: 'vtkedge' uploaded to mentors.debian.net

2010-02-26 Thread Mathieu Malaterre
Hi there, I made a package for VTKEdge. I did it using the umbrella of debian-med, but I am ok changing it to debian-science if people think this is required. I am looking for a sponsor BTW :) Thanks ! -- Forwarded message -- From: mentors.debian.net Date: Fri, Feb 26, 2010

Fwd: [openhealth] New medical FOSS listing/platform online

2010-03-02 Thread Mathieu Malaterre
FYI. This is yet another of those meta-list. -- Forwarded message -- Hi, this is meant to drop a short notice about a new listing/platform of free/libre and open source software (FOSS) projects for the health care domain. Furthermore if I may ask I would be very much interested

Re: Fwd: 'vtkedge' uploaded to mentors.debian.net

2010-03-10 Thread Mathieu Malaterre
Charles, On Mon, Mar 8, 2010 at 2:53 AM, Charles Plessy wrote: > Le Fri, Feb 26, 2010 at 04:10:51PM +0100, Mathieu Malaterre a écrit : >> >>   I made a package for VTKEdge. I did it using the umbrella of >> debian-med, but I am ok changing it to debian-science if people thin

Re: Fwd: 'vtkedge' uploaded to mentors.debian.net

2010-03-16 Thread Mathieu Malaterre
On Mon, Mar 15, 2010 at 6:24 PM, Andreas Tille wrote: > On Wed, Mar 10, 2010 at 02:25:17PM +0100, Mathieu Malaterre wrote: >> >> I reuploaded vtkedge, so if anyone wants to sponsor it I'd appreciate. >> Andreas if you have some time at the end of the week could yo

Re: Howto prevent viral dependency propagation by ITK or GDCM?

2010-04-28 Thread Mathieu Malaterre
On Wed, Apr 28, 2010 at 11:39 PM, Michael Hanke wrote: > Hi, > > I working on packaging ITK-SNAP (http://www.itksnap.org). This software > is GPL licensed. It is based on ITK, and ITK itself is linked or > includes any known library on this planet. > > It happens that ITK (and GDCM) also links aga

TreeTime: Bayesian sampling of phylogenetic trees from molecular data

2010-04-28 Thread Mathieu Malaterre
Some people brought my attention on the following package: http://treetime.linhi.com/ It looks fairly easy to package... -- Mathieu -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://l

Fwd: vxl_1.14.0-1_amd64.changes REJECTED

2010-05-03 Thread Mathieu Malaterre
Hi, I would like to upload vxl 1.14 as it is the latest version. I always forgot new upload are prohibited for DM. Thanks ! -- Forwarded message -- From: Archive Administrator Date: Mon, May 3, 2010 at 6:18 PM Subject: vxl_1.14.0-1_amd64.changes REJECTED To: Mathieu

Need Sponsor (was : Re: vxl_1.14.0-1_amd64.changes REJECTED)

2010-05-04 Thread Mathieu Malaterre
Hi Andreas, If you could sponsor me, that would be great ! Thanks ! On Mon, May 3, 2010 at 6:24 PM, Mathieu Malaterre wrote: > Hi, > >  I would like to upload vxl 1.14 as it is the latest version. I > always forgot new upload are prohibited for DM. > > Thanks ! > >

Re: Need Sponsor (was : Re: vxl_1.14.0-1_amd64.changes REJECTED)

2010-05-04 Thread Mathieu Malaterre
On Tue, May 4, 2010 at 12:51 PM, Andreas Tille wrote: > On Tue, May 04, 2010 at 09:45:46AM +0200, Mathieu Malaterre wrote: >>   If you could sponsor me, that would be great ! Thanks ! > > Done.  I hope you don't mind that I introduced a small change to Source > Format 3

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