This line will essentially overwrite what RStan does for compilation. So yes, this is potentially a bad thing.
On Mon, Nov 9, 2020 at 4:57 AM Goncalo Ferraz via R-SIG-Mac < r-sig-mac@r-project.org> wrote: > ok, found it! Makevars is where you said it would be and it contains only > this line: > > CXX14FLAGS += -O3 -mtune=native -arch x86_64 -ftemplate-depth-256 > > Does it seem to mean anything relevant? > > > On Nov 8, 2020, at 11:24 PM, Ken Beath <k...@kjbeath.com.au> wrote: > > > > It is actually Makevars. If it is there it will be in the .R directory > of your home folder. > > > > Unless it has been set up for something else, like Rcpp, then it can > probably be deleted. > > > > Ken > > > >> On 9 Nov 2020, at 12:43 pm, Goncalo Ferraz <gfap...@mac.com> wrote: > >> > >> Hi, > >> > >> Yes, at some point there was a problem with schools.stan, it needed an > extra (empty) line added to the end. But that didn’t solve the problem. I > tried at least three different tests, with different models, and the same > thing happens. > >> > >> Tried to get rid of .MakeVars and as I remember it didn’t change > anything. I wanted to try it again now, but I am not finding a .MakeVars > file anywhere on my computer. Where should it be? > >> > >> Thanks, > >> > >> Gonçalo > >> > >>> On Nov 8, 2020, at 8:04 PM, Ken Beath <k...@kjbeath.com.au> wrote: > >>> > >>> Guessing here. Possibly schools.stan has a problem, that is what teh > first error is suggesting. The remaining is a possible problem with > .MakeVars which is no longer needed with R. I would also check that files > aren’t being saved with a strange encoding. > >>> > >>> Ken > >>> > >>>> On 9 Nov 2020, at 7:25 am, Roy Mendelssohn - NOAA Federal via > R-SIG-Mac <r-sig-mac@r-project.org> wrote: > >>>> > >>>> Hi: > >>>> > >>>> While it is possible you will get the help you seek here, I think > you would likely to get more help, and more knowledgeable help, on this > more specialized issue, at the Stan Forum. https://discourse.mc-stan.org. > I remember seeing in the summaries I get some issues with different > combinations of versions of R, Stan and compilers. > >>>> > >>>> HTH, > >>>> > >>>> -Roy > >>>> > >>>>> On Nov 8, 2020, at 12:16 PM, Goncalo Ferraz via R-SIG-Mac < > r-sig-mac@r-project.org> wrote: > >>>>> > >>>>> Hi, > >>>>> > >>>>> I’ve been struggling with an rstan problem for weeks. I installed R > stan following instructions in > https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started#how-to-use-rstan > < > https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started#how-to-use-rstan> > to the letter, but when I try to compile any model R leaves me hanging > indefinitely (I’ve waited up to 30 minutes with ridiculously short models). > When I press esc R says: > >>>>> > >>>>> Warning messages: > >>>>> 1: In readLines(file, warn = TRUE) : > >>>>> incomplete final line found on > '/Users/gferraz/Documents/MAF/R/schools.stan' > >>>>> 2: In system(paste(CXX, ARGS), ignore.stdout = TRUE, ignore.stderr = > TRUE) : > >>>>> system call failed: Result too large > >>>>> 3: In system(paste(CXX, ARGS), ignore.stdout = TRUE, ignore.stderr = > TRUE) : > >>>>> error in running command > >>>>> > >>>>> And then, R won’t quit. I can only close it by force quitting the > software itself and some R process that is set in motion and appears in the > Activity Monitor. > >>>>> > >>>>> I have tried everything that was suggested in the stan forum, > including deleting all the contents of /usr/local, removing xcode, R and > re-installing everything again. > >>>>> > >>>>> The only thing that I can think of now is to do a clean install of > Mac OS on my machine and really start from scratch. > >>>>> > >>>>> Anyone has a less radical recommendation? > >>>>> > >>>>> Thank you, > >>>>> > >>>>> Gonçalo > >>>>> [[alternative HTML version deleted]] > >>>>> > >>>>> _______________________________________________ > >>>>> R-SIG-Mac mailing list > >>>>> R-SIG-Mac@r-project.org > >>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > >>>> > >>>> ********************** > >>>> "The contents of this message do not reflect any position of the U.S. > Government or NOAA." > >>>> ********************** > >>>> Roy Mendelssohn > >>>> Supervisory Operations Research Analyst > >>>> NOAA/NMFS > >>>> Environmental Research Division > >>>> Southwest Fisheries Science Center > >>>> ***Note new street address*** > >>>> 110 McAllister Way > >>>> Santa Cruz, CA 95060 > >>>> Phone: (831)-420-3666 > >>>> Fax: (831) 420-3980 > >>>> e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ > >>>> > >>>> "Old age and treachery will overcome youth and skill." > >>>> "From those who have been given much, much will be expected" > >>>> "the arc of the moral universe is long, but it bends toward justice" > -MLK Jr. > >>>> > >>>> _______________________________________________ > >>>> R-SIG-Mac mailing list > >>>> R-SIG-Mac@r-project.org > >>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > >>> > >> > > > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > -- Best, Kasper [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
