Guessing here. Possibly schools.stan has a problem, that is what teh first error is suggesting. The remaining is a possible problem with .MakeVars which is no longer needed with R. I would also check that files aren’t being saved with a strange encoding.
Ken > On 9 Nov 2020, at 7:25 am, Roy Mendelssohn - NOAA Federal via R-SIG-Mac > <r-sig-mac@r-project.org> wrote: > > Hi: > > While it is possible you will get the help you seek here, I think you would > likely to get more help, and more knowledgeable help, on this more > specialized issue, at the Stan Forum. https://discourse.mc-stan.org. I > remember seeing in the summaries I get some issues with different > combinations of versions of R, Stan and compilers. > > HTH, > > -Roy > >> On Nov 8, 2020, at 12:16 PM, Goncalo Ferraz via R-SIG-Mac >> <r-sig-mac@r-project.org> wrote: >> >> Hi, >> >> I’ve been struggling with an rstan problem for weeks. I installed R stan >> following instructions in >> https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started#how-to-use-rstan >> >> <https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started#how-to-use-rstan> >> to the letter, but when I try to compile any model R leaves me hanging >> indefinitely (I’ve waited up to 30 minutes with ridiculously short models). >> When I press esc R says: >> >> Warning messages: >> 1: In readLines(file, warn = TRUE) : >> incomplete final line found on '/Users/gferraz/Documents/MAF/R/schools.stan' >> 2: In system(paste(CXX, ARGS), ignore.stdout = TRUE, ignore.stderr = TRUE) : >> system call failed: Result too large >> 3: In system(paste(CXX, ARGS), ignore.stdout = TRUE, ignore.stderr = TRUE) : >> error in running command >> >> And then, R won’t quit. I can only close it by force quitting the software >> itself and some R process that is set in motion and appears in the Activity >> Monitor. >> >> I have tried everything that was suggested in the stan forum, including >> deleting all the contents of /usr/local, removing xcode, R and re-installing >> everything again. >> >> The only thing that I can think of now is to do a clean install of Mac OS on >> my machine and really start from scratch. >> >> Anyone has a less radical recommendation? >> >> Thank you, >> >> Gonçalo >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> R-SIG-Mac mailing list >> R-SIG-Mac@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > > ********************** > "The contents of this message do not reflect any position of the U.S. > Government or NOAA." > ********************** > Roy Mendelssohn > Supervisory Operations Research Analyst > NOAA/NMFS > Environmental Research Division > Southwest Fisheries Science Center > ***Note new street address*** > 110 McAllister Way > Santa Cruz, CA 95060 > Phone: (831)-420-3666 > Fax: (831) 420-3980 > e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ > > "Old age and treachery will overcome youth and skill." > "From those who have been given much, much will be expected" > "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
