It looks like what used to be suggested for stan. Move it elsewhere and then see what happens.
Ken > On 9 Nov 2020, at 2:57 pm, Goncalo Ferraz <gfap...@mac.com> wrote: > > ok, found it! Makevars is where you said it would be and it contains only > this line: > > CXX14FLAGS += -O3 -mtune=native -arch x86_64 -ftemplate-depth-256 > > Does it seem to mean anything relevant? > >> On Nov 8, 2020, at 11:24 PM, Ken Beath <k...@kjbeath.com.au> wrote: >> >> It is actually Makevars. If it is there it will be in the .R directory of >> your home folder. >> >> Unless it has been set up for something else, like Rcpp, then it can >> probably be deleted. >> >> Ken >> >>> On 9 Nov 2020, at 12:43 pm, Goncalo Ferraz <gfap...@mac.com> wrote: >>> >>> Hi, >>> >>> Yes, at some point there was a problem with schools.stan, it needed an >>> extra (empty) line added to the end. But that didn’t solve the problem. I >>> tried at least three different tests, with different models, and the same >>> thing happens. >>> >>> Tried to get rid of .MakeVars and as I remember it didn’t change anything. >>> I wanted to try it again now, but I am not finding a .MakeVars file >>> anywhere on my computer. Where should it be? >>> >>> Thanks, >>> >>> Gonçalo >>> >>>> On Nov 8, 2020, at 8:04 PM, Ken Beath <k...@kjbeath.com.au> wrote: >>>> >>>> Guessing here. Possibly schools.stan has a problem, that is what teh first >>>> error is suggesting. The remaining is a possible problem with .MakeVars >>>> which is no longer needed with R. I would also check that files aren’t >>>> being saved with a strange encoding. >>>> >>>> Ken >>>> >>>>> On 9 Nov 2020, at 7:25 am, Roy Mendelssohn - NOAA Federal via R-SIG-Mac >>>>> <r-sig-mac@r-project.org> wrote: >>>>> >>>>> Hi: >>>>> >>>>> While it is possible you will get the help you seek here, I think you >>>>> would likely to get more help, and more knowledgeable help, on this more >>>>> specialized issue, at the Stan Forum. https://discourse.mc-stan.org. I >>>>> remember seeing in the summaries I get some issues with different >>>>> combinations of versions of R, Stan and compilers. >>>>> >>>>> HTH, >>>>> >>>>> -Roy >>>>> >>>>>> On Nov 8, 2020, at 12:16 PM, Goncalo Ferraz via R-SIG-Mac >>>>>> <r-sig-mac@r-project.org> wrote: >>>>>> >>>>>> Hi, >>>>>> >>>>>> I’ve been struggling with an rstan problem for weeks. I installed R stan >>>>>> following instructions in >>>>>> https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started#how-to-use-rstan >>>>>> >>>>>> <https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started#how-to-use-rstan> >>>>>> to the letter, but when I try to compile any model R leaves me hanging >>>>>> indefinitely (I’ve waited up to 30 minutes with ridiculously short >>>>>> models). When I press esc R says: >>>>>> >>>>>> Warning messages: >>>>>> 1: In readLines(file, warn = TRUE) : >>>>>> incomplete final line found on >>>>>> '/Users/gferraz/Documents/MAF/R/schools.stan' >>>>>> 2: In system(paste(CXX, ARGS), ignore.stdout = TRUE, ignore.stderr = >>>>>> TRUE) : >>>>>> system call failed: Result too large >>>>>> 3: In system(paste(CXX, ARGS), ignore.stdout = TRUE, ignore.stderr = >>>>>> TRUE) : >>>>>> error in running command >>>>>> >>>>>> And then, R won’t quit. I can only close it by force quitting the >>>>>> software itself and some R process that is set in motion and appears in >>>>>> the Activity Monitor. >>>>>> >>>>>> I have tried everything that was suggested in the stan forum, including >>>>>> deleting all the contents of /usr/local, removing xcode, R and >>>>>> re-installing everything again. >>>>>> >>>>>> The only thing that I can think of now is to do a clean install of Mac >>>>>> OS on my machine and really start from scratch. >>>>>> >>>>>> Anyone has a less radical recommendation? >>>>>> >>>>>> Thank you, >>>>>> >>>>>> Gonçalo >>>>>> [[alternative HTML version deleted]] >>>>>> >>>>>> _______________________________________________ >>>>>> R-SIG-Mac mailing list >>>>>> R-SIG-Mac@r-project.org >>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>>>> >>>>> ********************** >>>>> "The contents of this message do not reflect any position of the U.S. >>>>> Government or NOAA." >>>>> ********************** >>>>> Roy Mendelssohn >>>>> Supervisory Operations Research Analyst >>>>> NOAA/NMFS >>>>> Environmental Research Division >>>>> Southwest Fisheries Science Center >>>>> ***Note new street address*** >>>>> 110 McAllister Way >>>>> Santa Cruz, CA 95060 >>>>> Phone: (831)-420-3666 >>>>> Fax: (831) 420-3980 >>>>> e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ >>>>> >>>>> "Old age and treachery will overcome youth and skill." >>>>> "From those who have been given much, much will be expected" >>>>> "the arc of the moral universe is long, but it bends toward justice" -MLK >>>>> Jr. >>>>> >>>>> _______________________________________________ >>>>> R-SIG-Mac mailing list >>>>> R-SIG-Mac@r-project.org >>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>>> >>> >> > _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
