Hi, Yes, at some point there was a problem with schools.stan, it needed an extra (empty) line added to the end. But that didn’t solve the problem. I tried at least three different tests, with different models, and the same thing happens.
Tried to get rid of .MakeVars and as I remember it didn’t change anything. I wanted to try it again now, but I am not finding a .MakeVars file anywhere on my computer. Where should it be? Thanks, Gonçalo > On Nov 8, 2020, at 8:04 PM, Ken Beath <k...@kjbeath.com.au> wrote: > > Guessing here. Possibly schools.stan has a problem, that is what teh first > error is suggesting. The remaining is a possible problem with .MakeVars which > is no longer needed with R. I would also check that files aren’t being saved > with a strange encoding. > > Ken > >> On 9 Nov 2020, at 7:25 am, Roy Mendelssohn - NOAA Federal via R-SIG-Mac >> <r-sig-mac@r-project.org> wrote: >> >> Hi: >> >> While it is possible you will get the help you seek here, I think you would >> likely to get more help, and more knowledgeable help, on this more >> specialized issue, at the Stan Forum. https://discourse.mc-stan.org. I >> remember seeing in the summaries I get some issues with different >> combinations of versions of R, Stan and compilers. >> >> HTH, >> >> -Roy >> >>> On Nov 8, 2020, at 12:16 PM, Goncalo Ferraz via R-SIG-Mac >>> <r-sig-mac@r-project.org> wrote: >>> >>> Hi, >>> >>> I’ve been struggling with an rstan problem for weeks. I installed R stan >>> following instructions in >>> https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started#how-to-use-rstan >>> >>> <https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started#how-to-use-rstan> >>> to the letter, but when I try to compile any model R leaves me hanging >>> indefinitely (I’ve waited up to 30 minutes with ridiculously short models). >>> When I press esc R says: >>> >>> Warning messages: >>> 1: In readLines(file, warn = TRUE) : >>> incomplete final line found on '/Users/gferraz/Documents/MAF/R/schools.stan' >>> 2: In system(paste(CXX, ARGS), ignore.stdout = TRUE, ignore.stderr = TRUE) : >>> system call failed: Result too large >>> 3: In system(paste(CXX, ARGS), ignore.stdout = TRUE, ignore.stderr = TRUE) : >>> error in running command >>> >>> And then, R won’t quit. I can only close it by force quitting the software >>> itself and some R process that is set in motion and appears in the Activity >>> Monitor. >>> >>> I have tried everything that was suggested in the stan forum, including >>> deleting all the contents of /usr/local, removing xcode, R and >>> re-installing everything again. >>> >>> The only thing that I can think of now is to do a clean install of Mac OS >>> on my machine and really start from scratch. >>> >>> Anyone has a less radical recommendation? >>> >>> Thank you, >>> >>> Gonçalo >>> [[alternative HTML version deleted]] >>> >>> _______________________________________________ >>> R-SIG-Mac mailing list >>> R-SIG-Mac@r-project.org >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> >> ********************** >> "The contents of this message do not reflect any position of the U.S. >> Government or NOAA." >> ********************** >> Roy Mendelssohn >> Supervisory Operations Research Analyst >> NOAA/NMFS >> Environmental Research Division >> Southwest Fisheries Science Center >> ***Note new street address*** >> 110 McAllister Way >> Santa Cruz, CA 95060 >> Phone: (831)-420-3666 >> Fax: (831) 420-3980 >> e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ >> >> "Old age and treachery will overcome youth and skill." >> "From those who have been given much, much will be expected" >> "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. >> >> _______________________________________________ >> R-SIG-Mac mailing list >> R-SIG-Mac@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
