ok, found it! Makevars is where you said it would be and it contains only this line:
CXX14FLAGS += -O3 -mtune=native -arch x86_64 -ftemplate-depth-256 Does it seem to mean anything relevant? > On Nov 8, 2020, at 11:24 PM, Ken Beath <k...@kjbeath.com.au> wrote: > > It is actually Makevars. If it is there it will be in the .R directory of > your home folder. > > Unless it has been set up for something else, like Rcpp, then it can probably > be deleted. > > Ken > >> On 9 Nov 2020, at 12:43 pm, Goncalo Ferraz <gfap...@mac.com> wrote: >> >> Hi, >> >> Yes, at some point there was a problem with schools.stan, it needed an extra >> (empty) line added to the end. But that didn’t solve the problem. I tried at >> least three different tests, with different models, and the same thing >> happens. >> >> Tried to get rid of .MakeVars and as I remember it didn’t change anything. I >> wanted to try it again now, but I am not finding a .MakeVars file anywhere >> on my computer. Where should it be? >> >> Thanks, >> >> Gonçalo >> >>> On Nov 8, 2020, at 8:04 PM, Ken Beath <k...@kjbeath.com.au> wrote: >>> >>> Guessing here. Possibly schools.stan has a problem, that is what teh first >>> error is suggesting. The remaining is a possible problem with .MakeVars >>> which is no longer needed with R. I would also check that files aren’t >>> being saved with a strange encoding. >>> >>> Ken >>> >>>> On 9 Nov 2020, at 7:25 am, Roy Mendelssohn - NOAA Federal via R-SIG-Mac >>>> <r-sig-mac@r-project.org> wrote: >>>> >>>> Hi: >>>> >>>> While it is possible you will get the help you seek here, I think you >>>> would likely to get more help, and more knowledgeable help, on this more >>>> specialized issue, at the Stan Forum. https://discourse.mc-stan.org. I >>>> remember seeing in the summaries I get some issues with different >>>> combinations of versions of R, Stan and compilers. >>>> >>>> HTH, >>>> >>>> -Roy >>>> >>>>> On Nov 8, 2020, at 12:16 PM, Goncalo Ferraz via R-SIG-Mac >>>>> <r-sig-mac@r-project.org> wrote: >>>>> >>>>> Hi, >>>>> >>>>> I’ve been struggling with an rstan problem for weeks. I installed R stan >>>>> following instructions in >>>>> https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started#how-to-use-rstan >>>>> >>>>> <https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started#how-to-use-rstan> >>>>> to the letter, but when I try to compile any model R leaves me hanging >>>>> indefinitely (I’ve waited up to 30 minutes with ridiculously short >>>>> models). When I press esc R says: >>>>> >>>>> Warning messages: >>>>> 1: In readLines(file, warn = TRUE) : >>>>> incomplete final line found on >>>>> '/Users/gferraz/Documents/MAF/R/schools.stan' >>>>> 2: In system(paste(CXX, ARGS), ignore.stdout = TRUE, ignore.stderr = >>>>> TRUE) : >>>>> system call failed: Result too large >>>>> 3: In system(paste(CXX, ARGS), ignore.stdout = TRUE, ignore.stderr = >>>>> TRUE) : >>>>> error in running command >>>>> >>>>> And then, R won’t quit. I can only close it by force quitting the >>>>> software itself and some R process that is set in motion and appears in >>>>> the Activity Monitor. >>>>> >>>>> I have tried everything that was suggested in the stan forum, including >>>>> deleting all the contents of /usr/local, removing xcode, R and >>>>> re-installing everything again. >>>>> >>>>> The only thing that I can think of now is to do a clean install of Mac OS >>>>> on my machine and really start from scratch. >>>>> >>>>> Anyone has a less radical recommendation? >>>>> >>>>> Thank you, >>>>> >>>>> Gonçalo >>>>> [[alternative HTML version deleted]] >>>>> >>>>> _______________________________________________ >>>>> R-SIG-Mac mailing list >>>>> R-SIG-Mac@r-project.org >>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>>> >>>> ********************** >>>> "The contents of this message do not reflect any position of the U.S. >>>> Government or NOAA." >>>> ********************** >>>> Roy Mendelssohn >>>> Supervisory Operations Research Analyst >>>> NOAA/NMFS >>>> Environmental Research Division >>>> Southwest Fisheries Science Center >>>> ***Note new street address*** >>>> 110 McAllister Way >>>> Santa Cruz, CA 95060 >>>> Phone: (831)-420-3666 >>>> Fax: (831) 420-3980 >>>> e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ >>>> >>>> "Old age and treachery will overcome youth and skill." >>>> "From those who have been given much, much will be expected" >>>> "the arc of the moral universe is long, but it bends toward justice" -MLK >>>> Jr. >>>> >>>> _______________________________________________ >>>> R-SIG-Mac mailing list >>>> R-SIG-Mac@r-project.org >>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>> >> > _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
