your file has a weird non-ASCII character on line 5, causing the syntax error
it mentions on line 5. Actually, your file has such characters on a whole bunch
of lines (5, 37, 40, 45, 53, 54, 59, 61, 63, 64). Not sure how they were added,
but if you delete them, then your file runs. If you provide more details on how
you made your file, people may be able to tell you how to avoid the problem.
-David
On Saturday, July 13, 2013 at 9:31 AM, Muhtari Adanan wrote:
>
>
> > Dear Group,
> >
> > I am a complete novice, thus hoped you would provide guidance on using
> > Pymol Scripts.
> >
> > When trying to run the above script, from Pymol's Script Library, on my
> > macpymol, i get the following error message - attached below is the
> > findSurfaceResidues.txt script.
> >
> > PyMOL>run findSurfaceResidues3
> > Traceback (most recent call last):
> > File
> > "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parser.py",
> > line 338, in parse
> > File
> > "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parsing.py",
> > line 455, in run_file
> > IOError: [Errno 2] No such file or directory: 'findSurfaceResidues3'
> > PyMOL>run findSurfaceResidues3.txt
> > Traceback (most recent call last):
> > File
> > "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parser.py",
> > line 338, in parse
> > File
> > "/Volumes/Data/scm/vikki/bld/MacPyMOL.app/pymol/modules/pymol/parsing.py",
> > line 455, in run_file
> > File "findSurfaceResidues3.txt", line 5
> >
> > ^
> > SyntaxError: invalid syntax
> >
>
> > Where am I, going astray?
> >
> > M.A.
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>
>
>
> Attachments:
> - findSurfaceResidues3.txt
>
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