Thanks Justin. I thought by default everything should be in downloads. Payman
-----Original Message----- From: gmx-users-boun...@gromacs.org [mailto:gmx-users-boun...@gromacs.org] On Behalf Of Justin A. Lemkul Sent: May 8, 2009 12:23 PM To: Discussion list for GROMACS users Subject: Re: [gmx-users] make install-mdrun Payman Pirzadeh wrote: > Thanks Diego, > > But, the latest I found on downloads of gromcs webpage was 4.0.3! Is > 4.0.4 somewhere else? The homepage and wiki both have the links to 4.0.4, or you can simply change the ftp link to point to gromacs-4.0.4 instead of 4.0.3. -Justin > > > > Payman > > > > *From:* gmx-users-boun...@gromacs.org > [mailto:gmx-users-boun...@gromacs.org] *On Behalf Of *Diego Enry Gomes > *Sent:* May 8, 2009 11:27 AM > *To:* Discussion list for GROMACS users > *Subject:* Re: [gmx-users] make install-mdrun > > > > get gromacs 4.04 > > > > Confirm if you changed the permissions correctly and can write anywhere > in /usr/local/ > > > > Are you doing this as 'root' or super user (sudo) ? Because if you are > just a regular user, will won't be able to change the permissions in > /usr/local/. So, configure gmx to be installed in your local dir. > > > > ./configure --prefix=/global/home/pirzadeh/gmx404 > > > > > > On May 8, 2009, at 10:10 AM, Payman Pirzadeh wrote: > > > > Hi All, > > I realized that I am missing (Lib and bin folders) analysis tools and > mdrun MPI. I re-installed the GROMACS 4.0.3, and I found that when I get > to 'make install-mdrun' the following messages show up ( I am just > copying last lines): > > > > make[2]: *** [install-libLTLIBRARIES] Error 1 > > make[2]: Leaving directory > `/global/home/pirzadeh/GROMACS4.0.3/gromacs/src/mdlib' > > make[1]: *** [install-am] Error 2 > > make[1]: Leaving directory > `/global/home/pirzadeh/GROMACS4.0.3/gromacs/src/mdlib' > > (cd ./src/kernel && make install-mdrun ; exit 0) > > make[1]: Entering directory > `/global/home/pirzadeh/GROMACS4.0.3/gromacs/src/kernel' > > /bin/sh ../../config/mkinstalldirs /usr/local/gromacs/bin > > mkdir -p -- /usr/local/gromacs/bin > > mkdir: cannot create directory `/usr/local/gromacs': Permission denied > > make[1]: *** [install-mdrun] Error 1 > > make[1]: Leaving directory > `/global/home/pirzadeh/GROMACS4.0.3/gromacs/src/kernel' > > > > I changed the permissions and I am still receiving the same message. I > will e appreciated if someone tell me what is going wrong?! > > > > Payman > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > <mailto:gmx-users@gromacs.org> > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org > <mailto:gmx-users-requ...@gromacs.org>. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > > > > > ------------------------------------------------------------------------ > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php -- ======================================== Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin ======================================== _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
