Hi All, I realized that I am missing (Lib and bin folders) analysis tools and mdrun MPI. I re-installed the GROMACS 4.0.3, and I found that when I get to 'make install-mdrun' the following messages show up ( I am just copying last lines):
make[2]: *** [install-libLTLIBRARIES] Error 1 make[2]: Leaving directory `/global/home/pirzadeh/GROMACS4.0.3/gromacs/src/mdlib' make[1]: *** [install-am] Error 2 make[1]: Leaving directory `/global/home/pirzadeh/GROMACS4.0.3/gromacs/src/mdlib' (cd ./src/kernel && make install-mdrun ; exit 0) make[1]: Entering directory `/global/home/pirzadeh/GROMACS4.0.3/gromacs/src/kernel' /bin/sh ../../config/mkinstalldirs /usr/local/gromacs/bin mkdir -p -- /usr/local/gromacs/bin mkdir: cannot create directory `/usr/local/gromacs': Permission denied make[1]: *** [install-mdrun] Error 1 make[1]: Leaving directory `/global/home/pirzadeh/GROMACS4.0.3/gromacs/src/kernel' I changed the permissions and I am still receiving the same message. I will e appreciated if someone tell me what is going wrong?! Payman
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