Payman Pirzadeh wrote:
Thanks Diego,
But, the latest I found on downloads of gromcs webpage was 4.0.3! Is
4.0.4 somewhere else?
The homepage and wiki both have the links to 4.0.4, or you can simply change the
ftp link to point to gromacs-4.0.4 instead of 4.0.3.
-Justin
Payman
*From:* gmx-users-boun...@gromacs.org
[mailto:gmx-users-boun...@gromacs.org] *On Behalf Of *Diego Enry Gomes
*Sent:* May 8, 2009 11:27 AM
*To:* Discussion list for GROMACS users
*Subject:* Re: [gmx-users] make install-mdrun
get gromacs 4.04
Confirm if you changed the permissions correctly and can write anywhere
in /usr/local/
Are you doing this as 'root' or super user (sudo) ? Because if you are
just a regular user, will won't be able to change the permissions in
/usr/local/. So, configure gmx to be installed in your local dir.
./configure --prefix=/global/home/pirzadeh/gmx404
On May 8, 2009, at 10:10 AM, Payman Pirzadeh wrote:
Hi All,
I realized that I am missing (Lib and bin folders) analysis tools and
mdrun MPI. I re-installed the GROMACS 4.0.3, and I found that when I get
to ‘make install-mdrun’ the following messages show up ( I am just
copying last lines):
make[2]: *** [install-libLTLIBRARIES] Error 1
make[2]: Leaving directory
`/global/home/pirzadeh/GROMACS4.0.3/gromacs/src/mdlib'
make[1]: *** [install-am] Error 2
make[1]: Leaving directory
`/global/home/pirzadeh/GROMACS4.0.3/gromacs/src/mdlib'
(cd ./src/kernel && make install-mdrun ; exit 0)
make[1]: Entering directory
`/global/home/pirzadeh/GROMACS4.0.3/gromacs/src/kernel'
/bin/sh ../../config/mkinstalldirs /usr/local/gromacs/bin
mkdir -p -- /usr/local/gromacs/bin
mkdir: cannot create directory `/usr/local/gromacs': Permission denied
make[1]: *** [install-mdrun] Error 1
make[1]: Leaving directory
`/global/home/pirzadeh/GROMACS4.0.3/gromacs/src/kernel'
I changed the permissions and I am still receiving the same message. I
will e appreciated if someone tell me what is going wrong?!
Payman
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--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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