External Email - Use Caution Dear Experts,
I found the issue. Few scripts I copy pasted from the website which caused font change. After typing in the terminal it works better now. Thank You Ramesh On Mon, Feb 3, 2025 at 7:50 PM Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > Does that file exist? > > On 2/2/2025 11:34 AM, Ramesh Babu wrote: > > External Email - Use Caution > Dear Experts, > > May I know why wmparc2diff is unreadable? Please suggest. > > Thank you > Ramesh > > On Fri, Jan 31, 2025, 9:01 PM Ramesh Babu <mgrameshbabu2...@gmail.com> > wrote: > >> Dear Yujing, >> >> For the command, >> freeview >> /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz >> >> MRIread failed: Unable to read from >> /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz >> >> $ mri_info >> /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz >> error: >> mghRead(/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz, >> -1): could not open file >> >> Thank you >> Ramesh >> >> >> >> >> On Fri, Jan 31, 2025 at 6:54 PM Huang, Yujing <yhuan...@mgh.harvard.edu> >> wrote: >> >>> Can you try these two commands? >>> >>> 1. freeview >>> /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz >>> >>> 2. mri_info >>> /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz >>> >>> >>> >>> *From:* freesurfer-boun...@nmr.mgh.harvard.edu < >>> freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Ramesh Babu >>> *Sent:* Friday, January 31, 2025 8:19 AM >>> *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> >>> *Subject:* Re: [Freesurfer] Error in loading wmparc2diff.mgz >>> >>> >>> >>> * External Email - Use Caution * >>> >>> Dear Yujing, >>> >>> >>> >>> Thank you for your prompt reply. Yes, it exists. >>> >>> >>> >>> $ ls -l >>> /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz >>> >>> -rwxrwxrwx 1 root root 65906 Jan 31 18:00 >>> /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff >>> .mgz >>> >>> >>> >>> But while loading manually it is not detected. Also, I used the "all >>> types" option, but same issue. >>> >>> >>> >>> Thanks >>> >>> Ramesh >>> >>> >>> >>> On Fri, Jan 31, 2025 at 6:41 PM Huang, Yujing <yhuan...@mgh.harvard.edu> >>> wrote: >>> >>> Can you check if the volume exists? >>> >>> ls -l >>> /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz >>> >>> >>> >>> I only see wmparc.mgz in your listed directory. >>> >>> >>> >>> Yujing >>> >>> >>> >>> *From:* freesurfer-boun...@nmr.mgh.harvard.edu < >>> freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Ramesh Babu >>> *Sent:* Friday, January 31, 2025 8:05 AM >>> *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> >>> *Subject:* Re: [Freesurfer] Error in loading wmparc2diff.mgz >>> >>> >>> >>> * External Email - Use Caution * >>> >>> Sorry, I forgot to attach the files with the earlier message. >>> >>> >>> >>> Dear Expert, >>> >>> >>> >>> I am finding an error in loading wmparc2diff.mgz in freeview. The error >>> report from the terminal is; >>> >>> >>> >>> $ freeview -v lowb.nii.gz >>> $SUBJECTS_DIR/$subj/mri/wmparc2diff.mgz:colormap=lut -f >>> $SUBJECTS_DIR/$subj/surf/lh.white:edgecolor=green >>> $SUBJECTS_DIR/$subj/surf/rh.white:edgecolor=green -viewport coronal >>> error: >>> mghRead(/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz, >>> -1): could not open file >>> MRIread failed: Unable to read from >>> /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz >>> >>> >>> >>> In the attached Error-1 file it shows error after entering the command >>> in the terminal. >>> >>> Error-2 file - trying to load the file manually. You cannot see the >>> wmparc2diff.mgz file though it is created and located in the folder. >>> >>> >>> >>> Please see the attached files and give your suggestions. >>> >>> >>> >>> Regards >>> >>> Ramesh >>> >>> >>> >>> On Fri, Jan 31, 2025 at 6:20 PM Ramesh Babu <mgrameshbabu2...@gmail.com> >>> wrote: >>> >>> Dear Expert, >>> >>> >>> >>> I am finding an error in loading wmparc2diff.mgz in freeview. The error >>> report from the terminal is; >>> >>> $ freeview -v lowb.nii.gz >>> $SUBJECTS_DIR/$subj/mri/wmparc2diff.mgz:colormap=lut -f >>> $SUBJECTS_DIR/$subj/surf/lh.white:edgecolor=green >>> $SUBJECTS_DIR/$subj/surf/rh.white:edgecolor=green -viewport coronal >>> error: >>> mghRead(/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz, >>> -1): could not open file >>> MRIread failed: Unable to read from >>> /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz >>> >>> >>> >>> Please see the attached file and give your suggestions. >>> >>> >>> >>> Regards >>> >>> Ramesh >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> *MailScanner has detected a possible fraud attempt from >>> "secure-web.cisco.com" claiming to be* >>> https://secure-web.cisco.com/124C43stXff3xNUWexQc7sVR_J_ncNGjVmrG7VDGzgyCwvxUoQa0SKg-bDoBA9kQWpIRU3nPnR1en7jn0Khhy69D3dgZ-gSO8Mgx0TrI9Mlg59r8On2Qntgo37afSeHt75u6LW11wnzjIB1CbgZOJBTQi0ZkrXOdDNeVC-0GyurBMaaxJ30NqraSeCCMKvunTjSu5FjHVkmY9S4ON6kDGq3oYdq7PXHdD4Cwnvv7ITcjUmKqZBlBgRX9HOPgU2P0UToOCOYzuJXjVInza1hy2YyoTObjGYEuL1fwID63n5aDOPEGm77ZYEve6yOA2BpHUsh3-7OKsCOcanApeJPbYGQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >>> <https://secure-web.cisco.com/1nJs0ku4hfI3bgUTpG3lchmSHRheODGVWj3X0BijKpWtnHQ9epN43J_vDLzxgMAcgl7bm_lnQdyw690eER7tGFhcYtORahRj0JjIKxODg3RoKkgeyoAJgCbpSZVsbna4P1gRod5bndciuMUg2deoZP5rUGtE__NZEn0WIoWB-RMPgsz6Bd2-QDLrobMWG7-qFrrLR1jAC5LutNvY95oJrORtDzSwJ4Pm8n2gulRlsx7whaT3z7-jtEmWJNEHSpXk3eX49gOZ8gpaAie2T9v0onZoNHegi3MSZM3eJws9lj-Y2QqXRgbZXAVkcyJdHR0SSvg8gHBUd7SGMExw7mt3WhQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> >>> The information in this e-mail is intended only for the person to whom >>> it is addressed. 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If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1R6iBM4LX6QqS6E2Jz8MG_iVeXLWf-QsmdJV_TJ8SUfVY_RRFsJz0aNrt6b2wVUkmJp8_dWzSs3V6JgzkJRVLB2e_tVaAcqp8y1aiZmpsUzPeLbEoRStL5FmizMYGGPmWs8SXmBjG7VhY9qz-DYZwLdibSmeYMh0dYsFc7tI6n2CqVHhCxXAAKBNu8phKJ_HFnQVaP4k0nfaJcjQmpk8KMJ54PXAlwoOdUPfCnLxHOP-7aWD3zJRTz2Cd07wYrvbNS4FABz7Q0Kt0N2GUYJbbZ1fG5pD1X6lDnre1WC05jx4_-01S6Dne-tqcF79oIqDlT3_9geA5OpoAP--cHBrRWw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1R6iBM4LX6QqS6E2Jz8MG_iVeXLWf-QsmdJV_TJ8SUfVY_RRFsJz0aNrt6b2wVUkmJp8_dWzSs3V6JgzkJRVLB2e_tVaAcqp8y1aiZmpsUzPeLbEoRStL5FmizMYGGPmWs8SXmBjG7VhY9qz-DYZwLdibSmeYMh0dYsFc7tI6n2CqVHhCxXAAKBNu8phKJ_HFnQVaP4k0nfaJcjQmpk8KMJ54PXAlwoOdUPfCnLxHOP-7aWD3zJRTz2Cd07wYrvbNS4FABz7Q0Kt0N2GUYJbbZ1fG5pD1X6lDnre1WC05jx4_-01S6Dne-tqcF79oIqDlT3_9geA5OpoAP--cHBrRWw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . >
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