Does that file exist?
On 2/2/2025 11:34 AM, Ramesh Babu wrote:
External Email - Use Caution
Dear Experts,
May I know why wmparc2diff is unreadable? Please suggest.
Thank you
Ramesh
On Fri, Jan 31, 2025, 9:01 PM Ramesh Babu <mgrameshbabu2...@gmail.com>
wrote:
Dear Yujing,
For the command,
freeview
/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz
MRIread failed: Unable to read from
/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz
$ mri_info
/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz
error:
mghRead(/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz,
-1): could not open file
Thank you
Ramesh
On Fri, Jan 31, 2025 at 6:54 PM Huang, Yujing
<yhuan...@mgh.harvard.edu> wrote:
Can you try these two commands?
1. freeview
/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz
2. mri_info
/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz
*From:*freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Ramesh
Babu
*Sent:* Friday, January 31, 2025 8:19 AM
*To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
*Subject:* Re: [Freesurfer] Error in loading wmparc2diff.mgz
* External Email - Use Caution *
Dear Yujing,
Thank you for your prompt reply. Yes, it exists.
$ ls -l
/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz
-rwxrwxrwx 1 root root 65906 Jan 31 18:00
/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz
But while loading manually it is not detected. Also, I used
the "all types" option, but same issue.
Thanks
Ramesh
On Fri, Jan 31, 2025 at 6:41 PM Huang, Yujing
<yhuan...@mgh.harvard.edu> wrote:
Can you check if the volume exists?
ls -l
/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz
I only see wmparc.mgz in your listed directory.
Yujing
*From:*freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of
*Ramesh Babu
*Sent:* Friday, January 31, 2025 8:05 AM
*To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
*Subject:* Re: [Freesurfer] Error in loading wmparc2diff.mgz
* External Email - Use Caution *
Sorry, I forgot to attach the files with the earlier message.
Dear Expert,
I am finding an error in loading wmparc2diff.mgz in
freeview. The error report from the terminal is;
$ freeview -v lowb.nii.gz
$SUBJECTS_DIR/$subj/mri/wmparc2diff.mgz:colormap=lut -f
$SUBJECTS_DIR/$subj/surf/lh.white:edgecolor=green
$SUBJECTS_DIR/$subj/surf/rh.white:edgecolor=green
-viewport coronal
error:
mghRead(/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz,
-1): could not open file
MRIread failed: Unable to read from
/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz
In the attached Error-1 file it shows error after entering
the command in the terminal.
Error-2 file - trying to load the file manually. You
cannot see the wmparc2diff.mgz file though it is created
and located in the folder.
Please see the attached files and give your suggestions.
Regards
Ramesh
On Fri, Jan 31, 2025 at 6:20 PM Ramesh Babu
<mgrameshbabu2...@gmail.com> wrote:
Dear Expert,
I am finding an error in loading wmparc2diff.mgz in
freeview. The error report from the terminal is;
$ freeview -v lowb.nii.gz
$SUBJECTS_DIR/$subj/mri/wmparc2diff.mgz:colormap=lut
-f $SUBJECTS_DIR/$subj/surf/lh.white:edgecolor=green
$SUBJECTS_DIR/$subj/surf/rh.white:edgecolor=green
-viewport coronal
error:
mghRead(/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz,
-1): could not open file
MRIread failed: Unable to read from
/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz
Please see the attached file and give your suggestions.
Regards
Ramesh
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://secure-web.cisco.com/1nJs0ku4hfI3bgUTpG3lchmSHRheODGVWj3X0BijKpWtnHQ9epN43J_vDLzxgMAcgl7bm_lnQdyw690eER7tGFhcYtORahRj0JjIKxODg3RoKkgeyoAJgCbpSZVsbna4P1gRod5bndciuMUg2deoZP5rUGtE__NZEn0WIoWB-RMPgsz6Bd2-QDLrobMWG7-qFrrLR1jAC5LutNvY95oJrORtDzSwJ4Pm8n2gulRlsx7whaT3z7-jtEmWJNEHSpXk3eX49gOZ8gpaAie2T9v0onZoNHegi3MSZM3eJws9lj-Y2QqXRgbZXAVkcyJdHR0SSvg8gHBUd7SGMExw7mt3WhQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer>
The information in this e-mail is intended only for the
person to whom it is addressed. If you believe this
e-mail was sent to you in error and the e-mail contains
patient information, please contact the Mass General
Brigham Compliance HelpLine at *MailScanner has detected a
possible fraud attempt from "secure-web.cisco.com"
claiming to be*
https://www.massgeneralbrigham.org/complianceline
<https://secure-web.cisco.com/1IjBx51WZFzV_9W6gQF6k68Pbwhuf1Xo6C9wN4JZhonF40RkDjkIZdm1VwzmRsvb4ROp0AZcPhM-y4G0wIj371btjfQowkTksuBGqDS8RpQ0J07hqGAhrSdHKoF0lIdl8iLmRvDHrZKjltFvH1Sd6qe-GLtrLHEJaqchYRKXWStLLlh5wRMAWM-q9DWyscvfoKc_jApvea5K95XAsIVw9OyUgARB5bb0ndgoP7rAehXrlTcGO9z_q6GLfa7xqUL__H9_HMRdIPAKOmZtumdAxuOxThPRFHtjaQrapgsr7wB-SkmsXXT-D2p9cHIji093dMJVqIdOMVCoSz6RhWWuUEA/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>
<*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://www.massgeneralbrigham.org/complianceline
<https://secure-web.cisco.com/1IjBx51WZFzV_9W6gQF6k68Pbwhuf1Xo6C9wN4JZhonF40RkDjkIZdm1VwzmRsvb4ROp0AZcPhM-y4G0wIj371btjfQowkTksuBGqDS8RpQ0J07hqGAhrSdHKoF0lIdl8iLmRvDHrZKjltFvH1Sd6qe-GLtrLHEJaqchYRKXWStLLlh5wRMAWM-q9DWyscvfoKc_jApvea5K95XAsIVw9OyUgARB5bb0ndgoP7rAehXrlTcGO9z_q6GLfa7xqUL__H9_HMRdIPAKOmZtumdAxuOxThPRFHtjaQrapgsr7wB-SkmsXXT-D2p9cHIji093dMJVqIdOMVCoSz6RhWWuUEA/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>>
.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://secure-web.cisco.com/1WwQJM2x8cynpquVqqhJebMIVs0ZsFXqqlDQNVfOwqazuOSU-jbUusYuqD-mdryUah-TrUQlnbDbl3UnPuEkR6KCx-4K0dG-t_ClomoPgJ6WVqyZiEVG1nMtzpE3DKHtONB6bxuIfl6Aj3viz3bnLrJo9bDSA7Fw074hG08L9SwUt96aRzwg8zW8iOfor4awlR_UJTrN9U7G7BFxt-p1Eryu649FoUBWbyVj4-M5DJ8LEMaRZsHaFAcKAQqech-54AdQ4z7mDqU81n52IsxCYSWZOY-373yWUgtQP7h5CSFzB_8gQ-Q7dwLZtSxfhgzL4I0JF3l8UeblIoYoAr3Mc3A/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer>
The information in this e-mail is intended only for the person
to whom it is addressed. If you believe this e-mail was sent
to you in error and the e-mail contains patient information,
please contact the Mass General Brigham Compliance HelpLine at
*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://www.massgeneralbrigham.org/complianceline
<https://secure-web.cisco.com/12fl5bduiyAPgvMzzZFQQHl3o0iYt0q2N5z7Dd9kqY4BfBsM-X-9ugI94TbT4pJC3Npj2INbQp25XxSQaY8mcxe4dZOAx3NJdRjy_8_SmYR6ArRUbgYI01S_LKLTB2qzk2rxlKCsKgmpfES461ChwK5YkbyLFdE6JQ6AgmwpOUJ7gB9TzOZ7YNEWPrjtX7HQrXdDewJb1_L32vrq7irVtUfinbOKwwIFjoRME3deqVqN-d2ZcMozGv1nafAxZgvxEYIx-GpofNkImdh3Afuuqs6UTfgpM2DrkOd9N9LX8n-4p25xYQUEKCGODQ7wKBx9mmz78AM8VOeVEbPrgNNyg1Q/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>
<*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://www.massgeneralbrigham.org/complianceline
<https://secure-web.cisco.com/12fl5bduiyAPgvMzzZFQQHl3o0iYt0q2N5z7Dd9kqY4BfBsM-X-9ugI94TbT4pJC3Npj2INbQp25XxSQaY8mcxe4dZOAx3NJdRjy_8_SmYR6ArRUbgYI01S_LKLTB2qzk2rxlKCsKgmpfES461ChwK5YkbyLFdE6JQ6AgmwpOUJ7gB9TzOZ7YNEWPrjtX7HQrXdDewJb1_L32vrq7irVtUfinbOKwwIFjoRME3deqVqN-d2ZcMozGv1nafAxZgvxEYIx-GpofNkImdh3Afuuqs6UTfgpM2DrkOd9N9LX8n-4p25xYQUEKCGODQ7wKBx9mmz78AM8VOeVEbPrgNNyg1Q/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>>
.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
