External Email - Use Caution Dear Yujing,
For the command, freeview /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz MRIread failed: Unable to read from /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz $ mri_info /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz error: mghRead(/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz, -1): could not open file Thank you Ramesh On Fri, Jan 31, 2025 at 6:54 PM Huang, Yujing <yhuan...@mgh.harvard.edu> wrote: > Can you try these two commands? > > 1. freeview > /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz > > 2. mri_info > /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Ramesh Babu > *Sent:* Friday, January 31, 2025 8:19 AM > *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > *Subject:* Re: [Freesurfer] Error in loading wmparc2diff.mgz > > > > * External Email - Use Caution * > > Dear Yujing, > > > > Thank you for your prompt reply. Yes, it exists. > > > > $ ls -l > /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz > > -rwxrwxrwx 1 root root 65906 Jan 31 18:00 > /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff > .mgz > > > > But while loading manually it is not detected. Also, I used the "all > types" option, but same issue. > > > > Thanks > > Ramesh > > > > On Fri, Jan 31, 2025 at 6:41 PM Huang, Yujing <yhuan...@mgh.harvard.edu> > wrote: > > Can you check if the volume exists? > > ls -l > /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz > > > > I only see wmparc.mgz in your listed directory. > > > > Yujing > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Ramesh Babu > *Sent:* Friday, January 31, 2025 8:05 AM > *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > *Subject:* Re: [Freesurfer] Error in loading wmparc2diff.mgz > > > > * External Email - Use Caution * > > Sorry, I forgot to attach the files with the earlier message. > > > > Dear Expert, > > > > I am finding an error in loading wmparc2diff.mgz in freeview. The error > report from the terminal is; > > > > $ freeview -v lowb.nii.gz > $SUBJECTS_DIR/$subj/mri/wmparc2diff.mgz:colormap=lut -f > $SUBJECTS_DIR/$subj/surf/lh.white:edgecolor=green > $SUBJECTS_DIR/$subj/surf/rh.white:edgecolor=green -viewport coronal > error: > mghRead(/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz, > -1): could not open file > MRIread failed: Unable to read from > /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz > > > > In the attached Error-1 file it shows error after entering the command in > the terminal. > > Error-2 file - trying to load the file manually. You cannot see the > wmparc2diff.mgz file though it is created and located in the folder. > > > > Please see the attached files and give your suggestions. > > > > Regards > > Ramesh > > > > On Fri, Jan 31, 2025 at 6:20 PM Ramesh Babu <mgrameshbabu2...@gmail.com> > wrote: > > Dear Expert, > > > > I am finding an error in loading wmparc2diff.mgz in freeview. The error > report from the terminal is; > > $ freeview -v lowb.nii.gz > $SUBJECTS_DIR/$subj/mri/wmparc2diff.mgz:colormap=lut -f > $SUBJECTS_DIR/$subj/surf/lh.white:edgecolor=green > $SUBJECTS_DIR/$subj/surf/rh.white:edgecolor=green -viewport coronal > error: > mghRead(/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz, > -1): could not open file > MRIread failed: Unable to read from > /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz > > > > Please see the attached file and give your suggestions. > > > > Regards > > Ramesh > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > *MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/17Ew-YRAyE28k0stLB_GZfCnrSZeKM945PbXAZ_3R26_DVcd6H272f0uqGFdmPjtT9u2WQWOnqKo3XhU6DTUaV9JleTztdFTMG8wnI3GpMu2LNqGiHWg_IQaSG5UT_4ktG08p0SF4vX5G6ZflcJPYuszJgnFSGOEZn3nXOg8LDEHZ8bwVaWT-aU2T6-lrMzumGQyOLHEidFIpqForY296N31g2hifHY20jFWmc38nOGrLhSe4drAveT-q5NzURCUe3XGu6kJeuMjwd-DCxJds6yDvPHEWIMDrpVUT5AKAt59rYzO68lKwzvMHT79TNRF0p6ZPuwfckLWAxsmjdkn7OA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > <https://secure-web.cisco.com/1nJs0ku4hfI3bgUTpG3lchmSHRheODGVWj3X0BijKpWtnHQ9epN43J_vDLzxgMAcgl7bm_lnQdyw690eER7tGFhcYtORahRj0JjIKxODg3RoKkgeyoAJgCbpSZVsbna4P1gRod5bndciuMUg2deoZP5rUGtE__NZEn0WIoWB-RMPgsz6Bd2-QDLrobMWG7-qFrrLR1jAC5LutNvY95oJrORtDzSwJ4Pm8n2gulRlsx7whaT3z7-jtEmWJNEHSpXk3eX49gOZ8gpaAie2T9v0onZoNHegi3MSZM3eJws9lj-Y2QqXRgbZXAVkcyJdHR0SSvg8gHBUd7SGMExw7mt3WhQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> > The information in this e-mail is intended only for the person to whom it > is addressed. 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