External Email - Use Caution Dear Experts,
May I know why wmparc2diff is unreadable? Please suggest. Thank you Ramesh On Fri, Jan 31, 2025, 9:01 PM Ramesh Babu <mgrameshbabu2...@gmail.com> wrote: > Dear Yujing, > > For the command, > freeview > /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz > > MRIread failed: Unable to read from > /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz > > $ mri_info > /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz > error: > mghRead(/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz, > -1): could not open file > > Thank you > Ramesh > > > > > On Fri, Jan 31, 2025 at 6:54 PM Huang, Yujing <yhuan...@mgh.harvard.edu> > wrote: > >> Can you try these two commands? >> >> 1. freeview >> /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz >> >> 2. mri_info >> /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz >> >> >> >> *From:* freesurfer-boun...@nmr.mgh.harvard.edu < >> freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Ramesh Babu >> *Sent:* Friday, January 31, 2025 8:19 AM >> *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> >> *Subject:* Re: [Freesurfer] Error in loading wmparc2diff.mgz >> >> >> >> * External Email - Use Caution * >> >> Dear Yujing, >> >> >> >> Thank you for your prompt reply. Yes, it exists. >> >> >> >> $ ls -l >> /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz >> >> -rwxrwxrwx 1 root root 65906 Jan 31 18:00 >> /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff >> .mgz >> >> >> >> But while loading manually it is not detected. Also, I used the "all >> types" option, but same issue. >> >> >> >> Thanks >> >> Ramesh >> >> >> >> On Fri, Jan 31, 2025 at 6:41 PM Huang, Yujing <yhuan...@mgh.harvard.edu> >> wrote: >> >> Can you check if the volume exists? >> >> ls -l >> /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz >> >> >> >> I only see wmparc.mgz in your listed directory. >> >> >> >> Yujing >> >> >> >> *From:* freesurfer-boun...@nmr.mgh.harvard.edu < >> freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Ramesh Babu >> *Sent:* Friday, January 31, 2025 8:05 AM >> *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> >> *Subject:* Re: [Freesurfer] Error in loading wmparc2diff.mgz >> >> >> >> * External Email - Use Caution * >> >> Sorry, I forgot to attach the files with the earlier message. >> >> >> >> Dear Expert, >> >> >> >> I am finding an error in loading wmparc2diff.mgz in freeview. The error >> report from the terminal is; >> >> >> >> $ freeview -v lowb.nii.gz >> $SUBJECTS_DIR/$subj/mri/wmparc2diff.mgz:colormap=lut -f >> $SUBJECTS_DIR/$subj/surf/lh.white:edgecolor=green >> $SUBJECTS_DIR/$subj/surf/rh.white:edgecolor=green -viewport coronal >> error: >> mghRead(/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz, >> -1): could not open file >> MRIread failed: Unable to read from >> /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz >> >> >> >> In the attached Error-1 file it shows error after entering the command in >> the terminal. >> >> Error-2 file - trying to load the file manually. You cannot see the >> wmparc2diff.mgz file though it is created and located in the folder. >> >> >> >> Please see the attached files and give your suggestions. >> >> >> >> Regards >> >> Ramesh >> >> >> >> On Fri, Jan 31, 2025 at 6:20 PM Ramesh Babu <mgrameshbabu2...@gmail.com> >> wrote: >> >> Dear Expert, >> >> >> >> I am finding an error in loading wmparc2diff.mgz in freeview. The error >> report from the terminal is; >> >> $ freeview -v lowb.nii.gz >> $SUBJECTS_DIR/$subj/mri/wmparc2diff.mgz:colormap=lut -f >> $SUBJECTS_DIR/$subj/surf/lh.white:edgecolor=green >> $SUBJECTS_DIR/$subj/surf/rh.white:edgecolor=green -viewport coronal >> error: >> mghRead(/mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz, >> -1): could not open file >> MRIread failed: Unable to read from >> /mnt/data_analysis/freesurfer_data/diffusion_recons/sub01/mri/wmparc2diff.mgz >> >> >> >> Please see the attached file and give your suggestions. >> >> >> >> Regards >> >> Ramesh >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> *MailScanner has detected a possible fraud attempt from >> "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1WwQJM2x8cynpquVqqhJebMIVs0ZsFXqqlDQNVfOwqazuOSU-jbUusYuqD-mdryUah-TrUQlnbDbl3UnPuEkR6KCx-4K0dG-t_ClomoPgJ6WVqyZiEVG1nMtzpE3DKHtONB6bxuIfl6Aj3viz3bnLrJo9bDSA7Fw074hG08L9SwUt96aRzwg8zW8iOfor4awlR_UJTrN9U7G7BFxt-p1Eryu649FoUBWbyVj4-M5DJ8LEMaRZsHaFAcKAQqech-54AdQ4z7mDqU81n52IsxCYSWZOY-373yWUgtQP7h5CSFzB_8gQ-Q7dwLZtSxfhgzL4I0JF3l8UeblIoYoAr3Mc3A/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >> <https://secure-web.cisco.com/1nJs0ku4hfI3bgUTpG3lchmSHRheODGVWj3X0BijKpWtnHQ9epN43J_vDLzxgMAcgl7bm_lnQdyw690eER7tGFhcYtORahRj0JjIKxODg3RoKkgeyoAJgCbpSZVsbna4P1gRod5bndciuMUg2deoZP5rUGtE__NZEn0WIoWB-RMPgsz6Bd2-QDLrobMWG7-qFrrLR1jAC5LutNvY95oJrORtDzSwJ4Pm8n2gulRlsx7whaT3z7-jtEmWJNEHSpXk3eX49gOZ8gpaAie2T9v0onZoNHegi3MSZM3eJws9lj-Y2QqXRgbZXAVkcyJdHR0SSvg8gHBUd7SGMExw7mt3WhQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> >> The information in this e-mail is intended only for the person to whom it >> is addressed. 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