External Email - Use Caution Wow, amazing. That worked!!
Thanks a ton!! Ben > On Jun 9, 2022, at 2:50 PM, Huang, Yujing <yhuan...@mgh.harvard.edu> wrote: > > > Hi Ben, > > Sorry, I didn’t make it clear. Remove hemi from your LUT. > > Hope it works this time. > > Yujing > > > > From: freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Benjamin Deck > Sent: Thursday, June 9, 2022 2:41 PM > To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Subject: Re: [Freesurfer] vertex out of range mris_label2annot > > External Email - Use Caution > > Hi Yujing, > > I tried with a couple labels and a new LUT. > > command : > > mris_label2annot --s sub-DAEK --h lh --a test --ldir > /mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/test_labels --ctab > /mnt/c/Users/Ben/Documents/GitHub/parcellationPipeline/li2019_to_dti/test_lut.txt > --maxstatwinner > > label files: > lh.Net_13_ROIs_1_lh_native_dil2.label > lh.Net_13_ROIs_2_lh_native_dil2.label > lh.Net_13_ROIs_3_lh_native_dil2.label > lh.Net_13_ROIs_4_lh_native_dil2.label > lh.Net_13_ROIs_5_lh_native_dil2.label > > LUT: > > # > #No. Label Name: R G B A > # > > 0 Unknown 0 0 0 0 > 1 lh.Net_13_ROIs_1_lh_native_dil2 122 135 50 0 > 2 rh.Net_13_ROIs_1_rh_native_dil2 0 192 32 0 > 3 lh.Net_13_ROIs_2_lh_native_dil2 115 145 90 0 > 4 rh.Net_13_ROIs_2_rh_native_dil2 125 100 10 0 > 5 lh.Net_13_ROIs_3_lh_native_dil2 20 90 0 0 > 6 rh.Net_13_ROIs_3_rh_native_dil2 0 100 60 0 > 7 lh.Net_13_ROIs_4_lh_native_dil2 122 135 50 0 > 8 rh.Net_13_ROIs_4_rh_native_dil2 80 40 20 0 > 9 lh.Net_13_ROIs_5_lh_native_dil2 122 0 50 0 > 10 rh.Net_13_ROIs_5_rh_native_dil2 100 135 100 0 > 11 lh.Net_13_ROIs_6_lh_native_dil2 0 100 60 0 > > > Still not sure why --ldir isn't working. > > freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b > > Ben > > > > Virus-free. MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be > http://secure-web.cisco.com/1G0V6vb2TBKa06_M7lOQBbjV2f5TV6iCvxjX0L5myAmxRKUVQ-00G7Kn8vpgT7b-a91wXSY5KaJ7P26iejFG60bhciOT6G1JBW6wyVrbNqFNXFGIW9EF1tTNalKAjNHbCfEF7WO8jhUKVdokFKkp8MI1vBXSP76L-C_8Px66SKgHShlDTDgTOhNp5tr7kAZbTvkjMVh_mbNJva4OWYoCVhuayCuWI4BzJ17kmN9DCyMgP-P_YNGZK_8jOwBE7waSUmxekTnaB9P3Y6yZesfScl1f0_MtfzM0-2kcNI45ZAUkOLK7L5KABQptUKnnkRv9R/http%3A%2F%2Fwww.avast.com > > On Thu, Jun 9, 2022 at 12:15 PM Huang, Yujing <yhuan...@mgh.harvard.edu> > wrote: > Hi Ben, > > I checked mris_label2annot implementation. It seems that it is expecting the > label files as [hemi].[label-name].label in –ldir directory. The label-name > needs to match what is specified in your LUT. > > If you would like to see if it works, it might be a good idea to create a new > directory and put just a couple of renamed label files there. > > Hope this helps. > > Yujing > > From: freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Benjamin Deck > Sent: Thursday, June 9, 2022 11:11 AM > To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Subject: Re: [Freesurfer] vertex out of range mris_label2annot > > External Email - Use Caution > > Oh apologies for the crossed-wires > > Sure, command: > > mris_label2annot --s sub-DAEK \ > --hemi lh \ > --ctab > /mnt/c/Users/Ben/Documents/GitHub/parcellationPipeline/li2019_to_dti/yeo2011nodesLUT.txt > \ > --a yeo2011nodes \ > --maxstatwinner \ > --ldir /mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels > > Thanks, > Ben > > > Virus-free. MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be > http://secure-web.cisco.com/1G0V6vb2TBKa06_M7lOQBbjV2f5TV6iCvxjX0L5myAmxRKUVQ-00G7Kn8vpgT7b-a91wXSY5KaJ7P26iejFG60bhciOT6G1JBW6wyVrbNqFNXFGIW9EF1tTNalKAjNHbCfEF7WO8jhUKVdokFKkp8MI1vBXSP76L-C_8Px66SKgHShlDTDgTOhNp5tr7kAZbTvkjMVh_mbNJva4OWYoCVhuayCuWI4BzJ17kmN9DCyMgP-P_YNGZK_8jOwBE7waSUmxekTnaB9P3Y6yZesfScl1f0_MtfzM0-2kcNI45ZAUkOLK7L5KABQptUKnnkRv9R/http%3A%2F%2Fwww.avast.com > > On Thu, Jun 9, 2022 at 11:08 AM Huang, Yujing <yhuan...@mgh.harvard.edu> > wrote: > Sorry, I meant the command that you ran with --ldir flag and generated empty > annotation file. > > From: freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Benjamin Deck > Sent: Thursday, June 9, 2022 10:58 AM > To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Subject: Re: [Freesurfer] vertex out of range mris_label2annot > > External Email - Use Caution > > Hi Yujing, > > Sure thing. > > Full command: > > mris_label2annot --s sub-DAEK --hemi lh --ctab > /mnt/c/Users/Ben/Documents/GitHub/parcellationPipeline/li2019_to_dti/yeo2011nodesLUT.txt > --a yeo2011nodes --maxstatwinner --l Net_10_ROIs_1_lh_native_dil2 --l > Net_10_ROIs_1_rh_native_dil2 --l Net_11_ROIs_1_lh_native_dil2 --l > Net_11_ROIs_1_rh_native_dil2 --l Net_12_ROIs_1_lh_native_dil2 --l > Net_12_ROIs_1_rh_native_dil2 --l Net_12_ROIs_2_lh_native_dil2 --l > Net_12_ROIs_2_rh_native_dil2 --l Net_13_ROIs_1_lh_native_dil2 --l > Net_13_ROIs_1_rh_native_dil2 --l Net_13_ROIs_2_lh_native_dil2 --l > Net_13_ROIs_2_rh_native_dil2 --l Net_13_ROIs_3_lh_native_dil2 --l > Net_13_ROIs_3_rh_native_dil2 --l Net_13_ROIs_4_lh_native_dil2 --l > Net_13_ROIs_4_rh_native_dil2 --l Net_13_ROIs_5_lh_native_dil2 --l > Net_14_ROIs_1_lh_native_dil2 --l Net_14_ROIs_1_rh_native_dil2 --l > Net_14_ROIs_2_lh_native_dil2 --l Net_14_ROIs_2_rh_native_dil2 --l > Net_14_ROIs_3_lh_native_dil2 --l Net_14_ROIs_3_rh_native_dil2 --l > Net_14_ROIs_4_lh_native_dil2 --l Net_14_ROIs_4_rh_native_dil2 --l > Net_14_ROIs_5_lh_native_dil2 --l Net_14_ROIs_5_rh_native_dil2 --l > Net_15_ROIs_1_lh_native_dil2 --l Net_15_ROIs_1_rh_native_dil2 --l > Net_16_ROIs_1_lh_native_dil2 --l Net_16_ROIs_1_rh_native_dil2 --l > Net_16_ROIs_2_lh_native_dil2 --l Net_16_ROIs_2_rh_native_dil2 --l > Net_16_ROIs_3_rh_native_dil2 --l Net_17_ROIs_1_lh_native_dil2 --l > Net_17_ROIs_1_rh_native_dil2 --l Net_17_ROIs_2_lh_native_dil2 --l > Net_17_ROIs_2_rh_native_dil2 --l Net_17_ROIs_3_lh_native_dil2 --l > Net_17_ROIs_3_rh_native_dil2 --l Net_17_ROIs_4_lh_native_dil2 --l > Net_17_ROIs_4_rh_native_dil2 --l Net_18_ROIs_1_lh_native_dil2 --l > Net_18_ROIs_1_rh_native_dil2 --l Net_18_ROIs_2_lh_native_dil2 --l > Net_18_ROIs_2_rh_native_dil2 --l Net_18_ROIs_3_lh_native_dil2 --l > Net_18_ROIs_3_rh_native_dil2 --l Net_18_ROIs_4_lh_native_dil2 --l > Net_18_ROIs_4_rh_native_dil2 --l Net_18_ROIs_5_lh_native_dil2 --l > Net_19_ROIs_1_lh_native_dil2 --l Net_19_ROIs_1_rh_native_dil2 --l > Net_2_ROIs_1_lh_native_dil2 --l Net_2_ROIs_1_rh_native_dil2 --l > Net_2_ROIs_2_lh_native_dil2 --l Net_2_ROIs_2_rh_native_dil2 --l > Net_3_ROIs_1_lh_native_dil2 --l Net_3_ROIs_1_rh_native_dil2 --l > Net_3_ROIs_2_lh_native_dil2 --l Net_3_ROIs_2_rh_native_dil2 --l > Net_3_ROIs_3_lh_native_dil2 --l Net_3_ROIs_3_rh_native_dil2 --l > Net_4_ROIs_1_lh_native_dil2 --l Net_4_ROIs_1_rh_native_dil2 --l > Net_5_ROIs_1_lh_native_dil2 --l Net_5_ROIs_1_rh_native_dil2 --l > Net_5_ROIs_2_lh_native_dil2 --l Net_5_ROIs_2_rh_native_dil2 --l > Net_5_ROIs_3_lh_native_dil2 --l Net_5_ROIs_3_rh_native_dil2 --l > Net_5_ROIs_4_lh_native_dil2 --l Net_5_ROIs_4_rh_native_dil2 --l > Net_6_ROIs_1_lh_native_dil2 --l Net_6_ROIs_1_rh_native_dil2 --l > Net_6_ROIs_2_lh_native_dil2 --l Net_6_ROIs_2_rh_native_dil2 --l > Net_6_ROIs_3_lh_native_dil2 --l Net_6_ROIs_3_rh_native_dil2 --l > Net_7_ROIs_1_lh_native_dil2 --l Net_7_ROIs_1_rh_native_dil2 --l > Net_7_ROIs_2_lh_native_dil2 --l Net_7_ROIs_2_rh_native_dil2 --l > Net_7_ROIs_3_rh_native_dil2 --l Net_8_ROIs_1_lh_native_dil2 --l > Net_8_ROIs_1_rh_native_dil2 --l Net_8_ROIs_2_lh_native_dil2 --l > Net_8_ROIs_2_rh_native_dil2 --l Net_8_ROIs_3_lh_native_dil2 --l > Net_8_ROIs_3_rh_native_dil2 --l Net_8_ROIs_4_lh_native_dil2 --l > Net_8_ROIs_4_rh_native_dil2 --l Net_8_ROIs_5_lh_native_dil2 --l > Net_8_ROIs_5_rh_native_dil2 --l Net_8_ROIs_6_rh_native_dil2 --l > Net_9_ROIs_1_lh_native_dil2 --l Net_9_ROIs_1_rh_native_dil2 --l > Net_9_ROIs_2_lh_native_dil2 --l Net_9_ROIs_2_rh_native_dil2 --l > Net_9_ROIs_3_lh_native_dil2 --l Net_9_ROIs_3_rh_native_dil2 --l > Net_9_ROIs_4_rh_native_dil2 --l Net_9_ROIs_5_rh_native_dil2 --l > Net_9_ROIs_6_rh_native_dil2 > > > You might need my LUT also----See attached. --I can also send you the label > files if you need me to. > > Thanks for your help! > > > Virus-free. MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be > http://secure-web.cisco.com/1G0V6vb2TBKa06_M7lOQBbjV2f5TV6iCvxjX0L5myAmxRKUVQ-00G7Kn8vpgT7b-a91wXSY5KaJ7P26iejFG60bhciOT6G1JBW6wyVrbNqFNXFGIW9EF1tTNalKAjNHbCfEF7WO8jhUKVdokFKkp8MI1vBXSP76L-C_8Px66SKgHShlDTDgTOhNp5tr7kAZbTvkjMVh_mbNJva4OWYoCVhuayCuWI4BzJ17kmN9DCyMgP-P_YNGZK_8jOwBE7waSUmxekTnaB9P3Y6yZesfScl1f0_MtfzM0-2kcNI45ZAUkOLK7L5KABQptUKnnkRv9R/http%3A%2F%2Fwww.avast.com > > On Thu, Jun 9, 2022 at 10:33 AM Huang, Yujing <yhuan...@mgh.harvard.edu> > wrote: > Can you provide the full command that you were having trouble? I would like > to see if I can reproduce here. > > Yujing > > From: freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Benjamin Deck > Sent: Thursday, June 9, 2022 10:11 AM > To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Subject: Re: [Freesurfer] vertex out of range mris_label2annot > > External Email - Use Caution > > Oh, that makes sense, as my --hemi flag is lh. > > However, when I run the same command with --ldir and the ctab LUT the --ldir > flag doesn't ID any of my label files. Therefore, I have to provide the --l > flags, otherwise it just creates an empty annotation file. > > Ben > > > Virus-free. MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be > http://secure-web.cisco.com/1G0V6vb2TBKa06_M7lOQBbjV2f5TV6iCvxjX0L5myAmxRKUVQ-00G7Kn8vpgT7b-a91wXSY5KaJ7P26iejFG60bhciOT6G1JBW6wyVrbNqFNXFGIW9EF1tTNalKAjNHbCfEF7WO8jhUKVdokFKkp8MI1vBXSP76L-C_8Px66SKgHShlDTDgTOhNp5tr7kAZbTvkjMVh_mbNJva4OWYoCVhuayCuWI4BzJ17kmN9DCyMgP-P_YNGZK_8jOwBE7waSUmxekTnaB9P3Y6yZesfScl1f0_MtfzM0-2kcNI45ZAUkOLK7L5KABQptUKnnkRv9R/http%3A%2F%2Fwww.avast.com > > On Thu, Jun 9, 2022 at 8:57 AM Huang, Yujing <yhuan...@mgh.harvard.edu> wrote: > Hi Benjamin, > > The error indicates that a label in Net_10_ROIs_1_rh_native_dil2.label has > vertex 254077 that is outside lh.orig. > > I’m wondering how you created those label files. > > Best, > > Yujing > > > > > From: freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Benjamin Deck > Sent: Monday, June 6, 2022 4:06 PM > To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Subject: [Freesurfer] vertex out of range mris_label2annot > > External Email - Use Caution > > Hi freesurfer experts, > > I am attempting to create a custom annotation file with the following LUT and > call: > > mris_label2annot --s sub-DAEK --hemi lh \ > --ctab sub-DAEK_yeoLUT.txt \ > --a yeo2011nodes \ > --maxstatwinner \ > --l Net_10_ROIs_1_lh_native_dil2.label \ > --l Net_10_ROIs_1_rh_native_dil2.label \ > --l Net_11_ROIs_1_lh_native_dil2.label \ > --l Net_11_ROIs_1_rh_native_dil2.label \ > --l Net_12_ROIs_1_lh_native_dil2.label \ > --l Net_12_ROIs_1_rh_native_dil2.label \ > --l Net_12_ROIs_2_lh_native_dil2.label \ > .....many other labels > > > LUT: > > 0 Unknown 0 0 0 0 > 1 Net_10_ROIs_1_lh_native 5 5 5 0 > 2 Net_10_ROIs_1_rh_native 25 5 25 0 > 3 Net_11_ROIs_1_lh_native 25 100 40 0 > 4 Net_11_ROIs_1_rh_native 70 130 180 0 > 5 Net_12_ROIs_1_lh_native 100 100 0 0 > 6 Net_12_ROIs_1_rh_native 196 58 250 0 > .....many others > > However, when I run the above command it breaks with the following issue: > > > Reading ctab sub-DAEK_yeoLUT.txt > Number of ctab entries 104 > > 7.2.0 > cwd /mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels > cmdline mris_label2annot --s sub-DAEK --hemi lh --ctab sub-DAEK_yeoLUT.txt > --a yeo2011nodes --maxstatwinner --l Net_10_ROIs_1_lh_native_dil2.label --l > Net_10_ROIs_1_rh_native_dil2.label --l Net_11_ROIs_1_lh_native_dil2.label --l > Net_11_ROIs_1_rh_native_dil2.label --l Net_12_ROIs_1_lh_native_dil2.label --l > Net_12_ROIs_1_rh_native_dil2.label --l Net_12_ROIs_2_lh_native_dil2.label --l > Net_12_ROIs_2_rh_native_dil2.label --l Net_13_ROIs_1_lh_native_dil2.label --l > Net_13_ROIs_1_rh_native_dil2.label --l Net_13_ROIs_2_lh_native_dil2.label --l > Net_13_ROIs_2_rh_native_dil2.label --l Net_13_ROIs_3_lh_native_dil2.label --l > Net_13_ROIs_3_rh_native_dil2.label --l Net_13_ROIs_4_lh_native_dil2.label --l > Net_13_ROIs_4_rh_native_dil2.label --l Net_13_ROIs_5_lh_native_dil2.label --l > Net_14_ROIs_1_lh_native_dil2.label --l Net_14_ROIs_1_rh_native_dil2.label --l > Net_14_ROIs_2_lh_native_dil2.label --l Net_14_ROIs_2_rh_native_dil2.label --l > Net_14_ROIs_3_lh_native_dil2.label --l Net_14_ROIs_3_rh_native_dil2.label --l > Net_14_ROIs_4_lh_native_dil2.label --l Net_14_ROIs_4_rh_native_dil2.label --l > Net_14_ROIs_5_lh_native_dil2.label --l Net_14_ROIs_5_rh_native_dil2.label --l > Net_15_ROIs_1_lh_native_dil2.label --l Net_15_ROIs_1_rh_native_dil2.label --l > Net_16_ROIs_1_lh_native_dil2.label --l Net_16_ROIs_1_rh_native_dil2.label --l > Net_16_ROIs_2_lh_native_dil2.label --l Net_16_ROIs_2_rh_native_dil2.label --l > Net_16_ROIs_3_rh_native_dil2.label --l Net_17_ROIs_1_lh_native_dil2.label --l > Net_17_ROIs_1_rh_native_dil2.label --l Net_17_ROIs_2_lh_native_dil2.label --l > Net_17_ROIs_2_rh_native_dil2.label --l Net_17_ROIs_3_lh_native_dil2.label --l > Net_17_ROIs_3_rh_native_dil2.label --l Net_17_ROIs_4_lh_native_dil2.label --l > Net_17_ROIs_4_rh_native_dil2.label --l Net_18_ROIs_1_lh_native_dil2.label --l > Net_18_ROIs_1_rh_native_dil2.label --l Net_18_ROIs_2_lh_native_dil2.label --l > Net_18_ROIs_2_rh_native_dil2.label --l Net_18_ROIs_3_lh_native_dil2.label --l > Net_18_ROIs_3_rh_native_dil2.label --l Net_18_ROIs_4_lh_native_dil2.label --l > Net_18_ROIs_4_rh_native_dil2.label --l Net_18_ROIs_5_lh_native_dil2.label --l > Net_19_ROIs_1_lh_native_dil2.label --l Net_19_ROIs_1_rh_native_dil2.label --l > Net_2_ROIs_1_lh_native_dil2.label --l Net_2_ROIs_1_rh_native_dil2.label --l > Net_2_ROIs_2_lh_native_dil2.label --l Net_2_ROIs_2_rh_native_dil2.label --l > Net_3_ROIs_1_lh_native_dil2.label --l Net_3_ROIs_1_rh_native_dil2.label --l > Net_3_ROIs_2_lh_native_dil2.label --l Net_3_ROIs_2_rh_native_dil2.label --l > Net_3_ROIs_3_lh_native_dil2.label --l Net_3_ROIs_3_rh_native_dil2.label --l > Net_4_ROIs_1_lh_native_dil2.label --l Net_4_ROIs_1_rh_native_dil2.label --l > Net_5_ROIs_1_lh_native_dil2.label --l Net_5_ROIs_1_rh_native_dil2.label --l > Net_5_ROIs_2_lh_native_dil2.label --l Net_5_ROIs_2_rh_native_dil2.label --l > Net_5_ROIs_3_lh_native_dil2.label --l Net_5_ROIs_3_rh_native_dil2.label --l > Net_5_ROIs_4_lh_native_dil2.label --l Net_5_ROIs_4_rh_native_dil2.label --l > Net_6_ROIs_1_lh_native_dil2.label --l Net_6_ROIs_1_rh_native_dil2.label --l > Net_6_ROIs_2_lh_native_dil2.label --l Net_6_ROIs_2_rh_native_dil2.label --l > Net_6_ROIs_3_lh_native_dil2.label --l Net_6_ROIs_3_rh_native_dil2.label --l > Net_7_ROIs_1_lh_native_dil2.label --l Net_7_ROIs_1_rh_native_dil2.label --l > Net_7_ROIs_2_lh_native_dil2.label --l Net_7_ROIs_2_rh_native_dil2.label --l > Net_7_ROIs_3_rh_native_dil2.label --l Net_8_ROIs_1_lh_native_dil2.label --l > Net_8_ROIs_1_rh_native_dil2.label --l Net_8_ROIs_2_lh_native_dil2.label --l > Net_8_ROIs_2_rh_native_dil2.label --l Net_8_ROIs_3_lh_native_dil2.label --l > Net_8_ROIs_3_rh_native_dil2.label --l Net_8_ROIs_4_lh_native_dil2.label --l > Net_8_ROIs_4_rh_native_dil2.label --l Net_8_ROIs_5_lh_native_dil2.label --l > Net_8_ROIs_5_rh_native_dil2.label --l Net_8_ROIs_6_rh_native_dil2.label --l > Net_9_ROIs_1_lh_native_dil2.label --l Net_9_ROIs_1_rh_native_dil2.label --l > Net_9_ROIs_2_lh_native_dil2.label --l Net_9_ROIs_2_rh_native_dil2.label --l > Net_9_ROIs_3_lh_native_dil2.label --l Net_9_ROIs_3_rh_native_dil2.label --l > Net_9_ROIs_4_rh_native_dil2.label --l Net_9_ROIs_5_rh_native_dil2.label --l > Net_9_ROIs_6_rh_native_dil2.label > sysname Linux > hostname LAPTOP-LPS9CH5E > machine x86_64 > user bdeck8317 > > subject sub-DAEK > hemi lh > SUBJECTS_DIR /mnt/c/Users/Ben/freesurfer/subjects > ColorTable sub-DAEK_yeoLUT.txt > AnnotName yeo2011nodes > nlables 104 > LabelThresh 0 0.000000 > Loading /mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/surf/lh.orig > 1 328965 Net_10_ROIs_1_lh_native > 2 1639705 Net_10_ROIs_1_rh_native > WARNING: vertex 210080 maps to multiple labels! (overwriting) > WARNING: vertex 210124 maps to multiple labels! (overwriting) > WARNING: vertex 210125 maps to multiple labels! (overwriting) > WARNING: vertex 210151 maps to multiple labels! (overwriting) > WARNING: vertex 210172 maps to multiple labels! (overwriting) > WARNING: vertex 210173 maps to multiple labels! (overwriting) > WARNING: vertex 211157 maps to multiple labels! (overwriting) > WARNING: vertex 211158 maps to multiple labels! (overwriting) > ERROR: Net_10_ROIs_1_rh_native_dil2.label, n=9538, vertex 254077 out of range > > > Any thoughts on the fix for this issue? > > Thanks > > > > -- > Benjamin L. Deck > Doctoral Student > Applied Cognitive and Brain Sciences > Department of Psychological and Brain Sciences > Drexel University > > > Virus-free. MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be > http://secure-web.cisco.com/1G0V6vb2TBKa06_M7lOQBbjV2f5TV6iCvxjX0L5myAmxRKUVQ-00G7Kn8vpgT7b-a91wXSY5KaJ7P26iejFG60bhciOT6G1JBW6wyVrbNqFNXFGIW9EF1tTNalKAjNHbCfEF7WO8jhUKVdokFKkp8MI1vBXSP76L-C_8Px66SKgHShlDTDgTOhNp5tr7kAZbTvkjMVh_mbNJva4OWYoCVhuayCuWI4BzJ17kmN9DCyMgP-P_YNGZK_8jOwBE7waSUmxekTnaB9P3Y6yZesfScl1f0_MtfzM0-2kcNI45ZAUkOLK7L5KABQptUKnnkRv9R/http%3A%2F%2Fwww.avast.com > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" > claiming to be > https://secure-web.cisco.com/1taIQlr3H_Ns5U3lYk6wY5aT9CD81GQuAspXcWQnZDnVaDngNciPP75N2ZyN4N-xi0nCZRdwBvMMsmLbtl06A0zoKoQ4GoMxopVkk4xsdMSBo7G9E9Dy0ZGvy9A2UwjwrHMo-wWrpKe4tfLUJJHpYXw1y0dDQPpBBd5WDxUCdEbtGO7Vrvz5oWb-JPK8iXYigyWWtT3HNQ9wj8bxdQI3NlLYHjd0msNDPv61T1Kvk5apeUHVQeUTAZ44D1Vmb_1wPXrCdFT3__zh1VYeVS8K0XX9rWJDjbp4g7gNXrUO57Ea5kmkX1ynNQSKytLSHLwAy/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General Brigham > Compliance HelpLine at MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be > https://secure-web.cisco.com/1ORzHzR78Uml52rJ8sBGRqlPw0XtFeMGIX3YQBselZNzE3MOwByYGhRHd-n8rIZ9E9qJXhE3klNKu4BOmFipOs3ejs0lO4BKYAzyOwnJDx5hcJpDYyC1WkC-mFGr3UpuZrhQ5CCjo_FyRL_ta_iPFJi4OegiJ0ENiPWqoJWKRERgYls1b3PWJKDJc8YGK9xG2-C4Sstg5Ml0GoT8vX7OuDiHwLGyhgiq6sThTeX6jKo4xf0ENThVedueMb1KUPh8lFW9YiEvnCARuovy-BVnPS5vb4e7TKiFOB7KmYYFscG0c9xYn8h0mxxzOum5Y8GgE/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > <MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be > https://secure-web.cisco.com/1ORzHzR78Uml52rJ8sBGRqlPw0XtFeMGIX3YQBselZNzE3MOwByYGhRHd-n8rIZ9E9qJXhE3klNKu4BOmFipOs3ejs0lO4BKYAzyOwnJDx5hcJpDYyC1WkC-mFGr3UpuZrhQ5CCjo_FyRL_ta_iPFJi4OegiJ0ENiPWqoJWKRERgYls1b3PWJKDJc8YGK9xG2-C4Sstg5Ml0GoT8vX7OuDiHwLGyhgiq6sThTeX6jKo4xf0ENThVedueMb1KUPh8lFW9YiEvnCARuovy-BVnPS5vb4e7TKiFOB7KmYYFscG0c9xYn8h0mxxzOum5Y8GgE/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > Please note that this e-mail is not secure (encrypted). If you do not wish > to continue communication over unencrypted e-mail, please notify the sender > of this message immediately. Continuing to send or respond to e-mail after > receiving this message means you understand and accept this risk and wish to > continue to communicate over unencrypted e-mail. > > > -- > Benjamin L. Deck > Doctoral Student > Applied Cognitive and Brain Sciences > Department of Psychological and Brain Sciences > Drexel University > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" > claiming to be > https://secure-web.cisco.com/1taIQlr3H_Ns5U3lYk6wY5aT9CD81GQuAspXcWQnZDnVaDngNciPP75N2ZyN4N-xi0nCZRdwBvMMsmLbtl06A0zoKoQ4GoMxopVkk4xsdMSBo7G9E9Dy0ZGvy9A2UwjwrHMo-wWrpKe4tfLUJJHpYXw1y0dDQPpBBd5WDxUCdEbtGO7Vrvz5oWb-JPK8iXYigyWWtT3HNQ9wj8bxdQI3NlLYHjd0msNDPv61T1Kvk5apeUHVQeUTAZ44D1Vmb_1wPXrCdFT3__zh1VYeVS8K0XX9rWJDjbp4g7gNXrUO57Ea5kmkX1ynNQSKytLSHLwAy/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General Brigham > Compliance HelpLine at MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be > https://secure-web.cisco.com/1ORzHzR78Uml52rJ8sBGRqlPw0XtFeMGIX3YQBselZNzE3MOwByYGhRHd-n8rIZ9E9qJXhE3klNKu4BOmFipOs3ejs0lO4BKYAzyOwnJDx5hcJpDYyC1WkC-mFGr3UpuZrhQ5CCjo_FyRL_ta_iPFJi4OegiJ0ENiPWqoJWKRERgYls1b3PWJKDJc8YGK9xG2-C4Sstg5Ml0GoT8vX7OuDiHwLGyhgiq6sThTeX6jKo4xf0ENThVedueMb1KUPh8lFW9YiEvnCARuovy-BVnPS5vb4e7TKiFOB7KmYYFscG0c9xYn8h0mxxzOum5Y8GgE/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > <MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be > https://secure-web.cisco.com/1ORzHzR78Uml52rJ8sBGRqlPw0XtFeMGIX3YQBselZNzE3MOwByYGhRHd-n8rIZ9E9qJXhE3klNKu4BOmFipOs3ejs0lO4BKYAzyOwnJDx5hcJpDYyC1WkC-mFGr3UpuZrhQ5CCjo_FyRL_ta_iPFJi4OegiJ0ENiPWqoJWKRERgYls1b3PWJKDJc8YGK9xG2-C4Sstg5Ml0GoT8vX7OuDiHwLGyhgiq6sThTeX6jKo4xf0ENThVedueMb1KUPh8lFW9YiEvnCARuovy-BVnPS5vb4e7TKiFOB7KmYYFscG0c9xYn8h0mxxzOum5Y8GgE/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > Please note that this e-mail is not secure (encrypted). If you do not wish > to continue communication over unencrypted e-mail, please notify the sender > of this message immediately. Continuing to send or respond to e-mail after > receiving this message means you understand and accept this risk and wish to > continue to communicate over unencrypted e-mail. > > > -- > Benjamin L. Deck > Doctoral Student > Applied Cognitive and Brain Sciences > Department of Psychological and Brain Sciences > Drexel University > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" > claiming to be > https://secure-web.cisco.com/1taIQlr3H_Ns5U3lYk6wY5aT9CD81GQuAspXcWQnZDnVaDngNciPP75N2ZyN4N-xi0nCZRdwBvMMsmLbtl06A0zoKoQ4GoMxopVkk4xsdMSBo7G9E9Dy0ZGvy9A2UwjwrHMo-wWrpKe4tfLUJJHpYXw1y0dDQPpBBd5WDxUCdEbtGO7Vrvz5oWb-JPK8iXYigyWWtT3HNQ9wj8bxdQI3NlLYHjd0msNDPv61T1Kvk5apeUHVQeUTAZ44D1Vmb_1wPXrCdFT3__zh1VYeVS8K0XX9rWJDjbp4g7gNXrUO57Ea5kmkX1ynNQSKytLSHLwAy/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General Brigham > Compliance HelpLine at MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be > https://secure-web.cisco.com/1ORzHzR78Uml52rJ8sBGRqlPw0XtFeMGIX3YQBselZNzE3MOwByYGhRHd-n8rIZ9E9qJXhE3klNKu4BOmFipOs3ejs0lO4BKYAzyOwnJDx5hcJpDYyC1WkC-mFGr3UpuZrhQ5CCjo_FyRL_ta_iPFJi4OegiJ0ENiPWqoJWKRERgYls1b3PWJKDJc8YGK9xG2-C4Sstg5Ml0GoT8vX7OuDiHwLGyhgiq6sThTeX6jKo4xf0ENThVedueMb1KUPh8lFW9YiEvnCARuovy-BVnPS5vb4e7TKiFOB7KmYYFscG0c9xYn8h0mxxzOum5Y8GgE/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > <MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be > https://secure-web.cisco.com/1ORzHzR78Uml52rJ8sBGRqlPw0XtFeMGIX3YQBselZNzE3MOwByYGhRHd-n8rIZ9E9qJXhE3klNKu4BOmFipOs3ejs0lO4BKYAzyOwnJDx5hcJpDYyC1WkC-mFGr3UpuZrhQ5CCjo_FyRL_ta_iPFJi4OegiJ0ENiPWqoJWKRERgYls1b3PWJKDJc8YGK9xG2-C4Sstg5Ml0GoT8vX7OuDiHwLGyhgiq6sThTeX6jKo4xf0ENThVedueMb1KUPh8lFW9YiEvnCARuovy-BVnPS5vb4e7TKiFOB7KmYYFscG0c9xYn8h0mxxzOum5Y8GgE/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > Please note that this e-mail is not secure (encrypted). If you do not wish > to continue communication over unencrypted e-mail, please notify the sender > of this message immediately. Continuing to send or respond to e-mail after > receiving this message means you understand and accept this risk and wish to > continue to communicate over unencrypted e-mail. > > > -- > Benjamin L. Deck > Doctoral Student > Applied Cognitive and Brain Sciences > Department of Psychological and Brain Sciences > Drexel University > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" > claiming to be > https://secure-web.cisco.com/1taIQlr3H_Ns5U3lYk6wY5aT9CD81GQuAspXcWQnZDnVaDngNciPP75N2ZyN4N-xi0nCZRdwBvMMsmLbtl06A0zoKoQ4GoMxopVkk4xsdMSBo7G9E9Dy0ZGvy9A2UwjwrHMo-wWrpKe4tfLUJJHpYXw1y0dDQPpBBd5WDxUCdEbtGO7Vrvz5oWb-JPK8iXYigyWWtT3HNQ9wj8bxdQI3NlLYHjd0msNDPv61T1Kvk5apeUHVQeUTAZ44D1Vmb_1wPXrCdFT3__zh1VYeVS8K0XX9rWJDjbp4g7gNXrUO57Ea5kmkX1ynNQSKytLSHLwAy/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General Brigham > Compliance HelpLine at MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be > https://secure-web.cisco.com/1ORzHzR78Uml52rJ8sBGRqlPw0XtFeMGIX3YQBselZNzE3MOwByYGhRHd-n8rIZ9E9qJXhE3klNKu4BOmFipOs3ejs0lO4BKYAzyOwnJDx5hcJpDYyC1WkC-mFGr3UpuZrhQ5CCjo_FyRL_ta_iPFJi4OegiJ0ENiPWqoJWKRERgYls1b3PWJKDJc8YGK9xG2-C4Sstg5Ml0GoT8vX7OuDiHwLGyhgiq6sThTeX6jKo4xf0ENThVedueMb1KUPh8lFW9YiEvnCARuovy-BVnPS5vb4e7TKiFOB7KmYYFscG0c9xYn8h0mxxzOum5Y8GgE/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > <MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be > https://secure-web.cisco.com/1ORzHzR78Uml52rJ8sBGRqlPw0XtFeMGIX3YQBselZNzE3MOwByYGhRHd-n8rIZ9E9qJXhE3klNKu4BOmFipOs3ejs0lO4BKYAzyOwnJDx5hcJpDYyC1WkC-mFGr3UpuZrhQ5CCjo_FyRL_ta_iPFJi4OegiJ0ENiPWqoJWKRERgYls1b3PWJKDJc8YGK9xG2-C4Sstg5Ml0GoT8vX7OuDiHwLGyhgiq6sThTeX6jKo4xf0ENThVedueMb1KUPh8lFW9YiEvnCARuovy-BVnPS5vb4e7TKiFOB7KmYYFscG0c9xYn8h0mxxzOum5Y8GgE/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > Please note that this e-mail is not secure (encrypted). If you do not wish > to continue communication over unencrypted e-mail, please notify the sender > of this message immediately. Continuing to send or respond to e-mail after > receiving this message means you understand and accept this risk and wish to > continue to communicate over unencrypted e-mail. > > > -- > Benjamin L. Deck > Doctoral Student > Applied Cognitive and Brain Sciences > Department of Psychological and Brain Sciences > Drexel University > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1taIQlr3H_Ns5U3lYk6wY5aT9CD81GQuAspXcWQnZDnVaDngNciPP75N2ZyN4N-xi0nCZRdwBvMMsmLbtl06A0zoKoQ4GoMxopVkk4xsdMSBo7G9E9Dy0ZGvy9A2UwjwrHMo-wWrpKe4tfLUJJHpYXw1y0dDQPpBBd5WDxUCdEbtGO7Vrvz5oWb-JPK8iXYigyWWtT3HNQ9wj8bxdQI3NlLYHjd0msNDPv61T1Kvk5apeUHVQeUTAZ44D1Vmb_1wPXrCdFT3__zh1VYeVS8K0XX9rWJDjbp4g7gNXrUO57Ea5kmkX1ynNQSKytLSHLwAy/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General Brigham > Compliance HelpLine at > https://secure-web.cisco.com/1ORzHzR78Uml52rJ8sBGRqlPw0XtFeMGIX3YQBselZNzE3MOwByYGhRHd-n8rIZ9E9qJXhE3klNKu4BOmFipOs3ejs0lO4BKYAzyOwnJDx5hcJpDYyC1WkC-mFGr3UpuZrhQ5CCjo_FyRL_ta_iPFJi4OegiJ0ENiPWqoJWKRERgYls1b3PWJKDJc8YGK9xG2-C4Sstg5Ml0GoT8vX7OuDiHwLGyhgiq6sThTeX6jKo4xf0ENThVedueMb1KUPh8lFW9YiEvnCARuovy-BVnPS5vb4e7TKiFOB7KmYYFscG0c9xYn8h0mxxzOum5Y8GgE/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > > <https://secure-web.cisco.com/1ORzHzR78Uml52rJ8sBGRqlPw0XtFeMGIX3YQBselZNzE3MOwByYGhRHd-n8rIZ9E9qJXhE3klNKu4BOmFipOs3ejs0lO4BKYAzyOwnJDx5hcJpDYyC1WkC-mFGr3UpuZrhQ5CCjo_FyRL_ta_iPFJi4OegiJ0ENiPWqoJWKRERgYls1b3PWJKDJc8YGK9xG2-C4Sstg5Ml0GoT8vX7OuDiHwLGyhgiq6sThTeX6jKo4xf0ENThVedueMb1KUPh8lFW9YiEvnCARuovy-BVnPS5vb4e7TKiFOB7KmYYFscG0c9xYn8h0mxxzOum5Y8GgE/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > Please note that this e-mail is not secure (encrypted). If you do not wish > to continue communication over unencrypted e-mail, please notify the sender > of this message immediately. Continuing to send or respond to e-mail after > receiving this message means you understand and accept this risk and wish to > continue to communicate over unencrypted e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
