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Hi freesurfer experts,

I am attempting to create a custom annotation file with the following LUT
and call:

mris_label2annot  --s sub-DAEK --hemi lh \
--ctab sub-DAEK_yeoLUT.txt \
--a yeo2011nodes \
--maxstatwinner \
--l  Net_10_ROIs_1_lh_native_dil2.label \
--l  Net_10_ROIs_1_rh_native_dil2.label \
--l  Net_11_ROIs_1_lh_native_dil2.label \
--l  Net_11_ROIs_1_rh_native_dil2.label \
--l  Net_12_ROIs_1_lh_native_dil2.label \
--l  Net_12_ROIs_1_rh_native_dil2.label \
--l  Net_12_ROIs_2_lh_native_dil2.label \
.....many other labels


LUT:

0 Unknown 0 0 0 0
1 Net_10_ROIs_1_lh_native 5   5   5   0
2 Net_10_ROIs_1_rh_native 25  5   25  0
3 Net_11_ROIs_1_lh_native 25  100 40  0
4 Net_11_ROIs_1_rh_native 70  130 180 0
5 Net_12_ROIs_1_lh_native 100 100 0   0
6 Net_12_ROIs_1_rh_native 196 58  250 0
.....many others

However, when I run the above command it breaks with the following issue:


Reading ctab sub-DAEK_yeoLUT.txt
Number of ctab entries 104

7.2.0
cwd /mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/label/li2019_labels
cmdline mris_label2annot --s sub-DAEK --hemi lh --ctab sub-DAEK_yeoLUT.txt
--a yeo2011nodes --maxstatwinner --l Net_10_ROIs_1_lh_native_dil2.label --l
Net_10_ROIs_1_rh_native_dil2.label --l Net_11_ROIs_1_lh_native_dil2.label
--l Net_11_ROIs_1_rh_native_dil2.label --l
Net_12_ROIs_1_lh_native_dil2.label --l Net_12_ROIs_1_rh_native_dil2.label
--l Net_12_ROIs_2_lh_native_dil2.label --l
Net_12_ROIs_2_rh_native_dil2.label --l Net_13_ROIs_1_lh_native_dil2.label
--l Net_13_ROIs_1_rh_native_dil2.label --l
Net_13_ROIs_2_lh_native_dil2.label --l Net_13_ROIs_2_rh_native_dil2.label
--l Net_13_ROIs_3_lh_native_dil2.label --l
Net_13_ROIs_3_rh_native_dil2.label --l Net_13_ROIs_4_lh_native_dil2.label
--l Net_13_ROIs_4_rh_native_dil2.label --l
Net_13_ROIs_5_lh_native_dil2.label --l Net_14_ROIs_1_lh_native_dil2.label
--l Net_14_ROIs_1_rh_native_dil2.label --l
Net_14_ROIs_2_lh_native_dil2.label --l Net_14_ROIs_2_rh_native_dil2.label
--l Net_14_ROIs_3_lh_native_dil2.label --l
Net_14_ROIs_3_rh_native_dil2.label --l Net_14_ROIs_4_lh_native_dil2.label
--l Net_14_ROIs_4_rh_native_dil2.label --l
Net_14_ROIs_5_lh_native_dil2.label --l Net_14_ROIs_5_rh_native_dil2.label
--l Net_15_ROIs_1_lh_native_dil2.label --l
Net_15_ROIs_1_rh_native_dil2.label --l Net_16_ROIs_1_lh_native_dil2.label
--l Net_16_ROIs_1_rh_native_dil2.label --l
Net_16_ROIs_2_lh_native_dil2.label --l Net_16_ROIs_2_rh_native_dil2.label
--l Net_16_ROIs_3_rh_native_dil2.label --l
Net_17_ROIs_1_lh_native_dil2.label --l Net_17_ROIs_1_rh_native_dil2.label
--l Net_17_ROIs_2_lh_native_dil2.label --l
Net_17_ROIs_2_rh_native_dil2.label --l Net_17_ROIs_3_lh_native_dil2.label
--l Net_17_ROIs_3_rh_native_dil2.label --l
Net_17_ROIs_4_lh_native_dil2.label --l Net_17_ROIs_4_rh_native_dil2.label
--l Net_18_ROIs_1_lh_native_dil2.label --l
Net_18_ROIs_1_rh_native_dil2.label --l Net_18_ROIs_2_lh_native_dil2.label
--l Net_18_ROIs_2_rh_native_dil2.label --l
Net_18_ROIs_3_lh_native_dil2.label --l Net_18_ROIs_3_rh_native_dil2.label
--l Net_18_ROIs_4_lh_native_dil2.label --l
Net_18_ROIs_4_rh_native_dil2.label --l Net_18_ROIs_5_lh_native_dil2.label
--l Net_19_ROIs_1_lh_native_dil2.label --l
Net_19_ROIs_1_rh_native_dil2.label --l Net_2_ROIs_1_lh_native_dil2.label
--l Net_2_ROIs_1_rh_native_dil2.label --l Net_2_ROIs_2_lh_native_dil2.label
--l Net_2_ROIs_2_rh_native_dil2.label --l Net_3_ROIs_1_lh_native_dil2.label
--l Net_3_ROIs_1_rh_native_dil2.label --l Net_3_ROIs_2_lh_native_dil2.label
--l Net_3_ROIs_2_rh_native_dil2.label --l Net_3_ROIs_3_lh_native_dil2.label
--l Net_3_ROIs_3_rh_native_dil2.label --l Net_4_ROIs_1_lh_native_dil2.label
--l Net_4_ROIs_1_rh_native_dil2.label --l Net_5_ROIs_1_lh_native_dil2.label
--l Net_5_ROIs_1_rh_native_dil2.label --l Net_5_ROIs_2_lh_native_dil2.label
--l Net_5_ROIs_2_rh_native_dil2.label --l Net_5_ROIs_3_lh_native_dil2.label
--l Net_5_ROIs_3_rh_native_dil2.label --l Net_5_ROIs_4_lh_native_dil2.label
--l Net_5_ROIs_4_rh_native_dil2.label --l Net_6_ROIs_1_lh_native_dil2.label
--l Net_6_ROIs_1_rh_native_dil2.label --l Net_6_ROIs_2_lh_native_dil2.label
--l Net_6_ROIs_2_rh_native_dil2.label --l Net_6_ROIs_3_lh_native_dil2.label
--l Net_6_ROIs_3_rh_native_dil2.label --l Net_7_ROIs_1_lh_native_dil2.label
--l Net_7_ROIs_1_rh_native_dil2.label --l Net_7_ROIs_2_lh_native_dil2.label
--l Net_7_ROIs_2_rh_native_dil2.label --l Net_7_ROIs_3_rh_native_dil2.label
--l Net_8_ROIs_1_lh_native_dil2.label --l Net_8_ROIs_1_rh_native_dil2.label
--l Net_8_ROIs_2_lh_native_dil2.label --l Net_8_ROIs_2_rh_native_dil2.label
--l Net_8_ROIs_3_lh_native_dil2.label --l Net_8_ROIs_3_rh_native_dil2.label
--l Net_8_ROIs_4_lh_native_dil2.label --l Net_8_ROIs_4_rh_native_dil2.label
--l Net_8_ROIs_5_lh_native_dil2.label --l Net_8_ROIs_5_rh_native_dil2.label
--l Net_8_ROIs_6_rh_native_dil2.label --l Net_9_ROIs_1_lh_native_dil2.label
--l Net_9_ROIs_1_rh_native_dil2.label --l Net_9_ROIs_2_lh_native_dil2.label
--l Net_9_ROIs_2_rh_native_dil2.label --l Net_9_ROIs_3_lh_native_dil2.label
--l Net_9_ROIs_3_rh_native_dil2.label --l Net_9_ROIs_4_rh_native_dil2.label
--l Net_9_ROIs_5_rh_native_dil2.label --l Net_9_ROIs_6_rh_native_dil2.label
sysname  Linux
hostname LAPTOP-LPS9CH5E
machine  x86_64
user     bdeck8317

subject sub-DAEK
hemi    lh
SUBJECTS_DIR /mnt/c/Users/Ben/freesurfer/subjects
ColorTable sub-DAEK_yeoLUT.txt
AnnotName  yeo2011nodes
nlables 104
LabelThresh 0 0.000000
Loading /mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/surf/lh.orig
 1 328965 Net_10_ROIs_1_lh_native
 2 1639705 Net_10_ROIs_1_rh_native
WARNING: vertex 210080 maps to multiple labels! (overwriting)
WARNING: vertex 210124 maps to multiple labels! (overwriting)
WARNING: vertex 210125 maps to multiple labels! (overwriting)
WARNING: vertex 210151 maps to multiple labels! (overwriting)
WARNING: vertex 210172 maps to multiple labels! (overwriting)
WARNING: vertex 210173 maps to multiple labels! (overwriting)
WARNING: vertex 211157 maps to multiple labels! (overwriting)
WARNING: vertex 211158 maps to multiple labels! (overwriting)
ERROR: Net_10_ROIs_1_rh_native_dil2.label, n=9538, vertex 254077 out of
range


Any thoughts on the fix for this issue?

Thanks



-- 
*Benjamin L. Deck*
*Doctoral Student*
*Applied Cognitive and Brain Sciences*
*Department of Psychological and Brain Sciences*
*Drexel University*

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