External Email - Use Caution I did that, but the error remains the same.
> mri_segstats --slabel CSRI001 ?h $SUBJECTS_DIR/CSRI001/label/?h.cortex > --i $SUBJECTS_DIR/CSRI001/surf/?h.pial_lgi --sum > h.aparc.pial_lgi-csri001.stats On Wed, Sep 9, 2020 at 11:32 PM Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > You need to include the hemisphere in the --slabel arguments (maybe the > 2nd one) > > On 9/9/2020 2:10 PM, vittal korann wrote: > > External Email - Use Caution > Dear Douglas > > Thank you for your help! > > I got an error while executing the mris_segstats command. > > Command: >> mri_segstats --slabel CSRI001?h >> $SUBJECTS_DIR/CSRI001/label/?h.cortex.label --i >> $SUBJECTS_DIR/CSRI001/surf/?h.pial_lgi --sum h.aparc.pial_lgi-csri001.stats > > > > ERROR: Option /usr/local/freesurfer//subjects/CSRI001/surf/rh.pial_lgi >> unknown > > > Please correct me if something wrong in the command line. > Sorry for troubling you again. > With regards > Vittal > > > > On Wed, Sep 9, 2020 at 10:23 PM Douglas N. Greve <dgr...@mgh.harvard.edu> > wrote: > >> You can use mri_segstats with the --slabel option, specifying the >> ?h.cortex.label and using the gyrification as input >> >> On 9/9/2020 12:54 PM, vittal korann wrote: >> >> External Email - Use Caution >> Thank you so much, Douglas. >> >> Could you please guide me to obtain the global mean gyrification index >> for each subject? >> >> With regards >> korann >> >> >> The information in this e-mail is intended only for the person to whom it >> is addressed. If you believe this e-mail was sent to you in error and the >> e-mail contains patient information, please contact the Mass General >> Brigham Compliance HelpLine at >> http://www.massgeneralbrigham.org/complianceline . If the e-mail was >> sent to you in error but does not contain patient information, please >> contact the sender and properly dispose of the e-mail. >> > > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > http://www.massgeneralbrigham.org/complianceline . If the e-mail was sent > to you in error but does not contain patient information, please contact > the sender and properly dispose of the e-mail. >
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