On 9/10/2020 12:08 PM, vittal korann wrote:
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Finally, it worked. Thank you, Douglas.
My question is regarding the mean gyrification similar to what we get
for thickness as a whole-brain mean thickness.
I'm not sure what you are asking here. gyrification and thickness are
different
If there is a way to calculate, please let me know.
What?
Here is a command that I executed and got the mean gyrification value
for the left/right hemisphere.
mri_segstats --slabel CSRI004 rh
$SUBJECTS_DIR/CSRI004/label/rh.cortex --i
$SUBJECTS_DIR/CSRI004/surf/rh.pial_lgi --sum
h.aparc.pial_lgi-csri004.stats
*/
/*
On Thu, Sep 10, 2020 at 7:22 PM Douglas N. Greve
<dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> wrote:
Can you send the actual command you ran and all the terminal output?
On 9/10/2020 12:58 AM, vittal korann wrote:
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Yes, I did replace question marks with left and right.
Thank you so much, Douglas.
With regards
Vittal
*/
/*
On Thu, Sep 10, 2020 at 1:11 AM Douglas N. Greve
<dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> wrote:
Are you using actual question marks or are you replacing them
with l or r? (you have to replace)
On 9/9/2020 2:26 PM, vittal korann wrote:
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I did that, but the error remains the same.
mri_segstats --slabel CSRI001 ?h
$SUBJECTS_DIR/CSRI001/label/?h.cortex --i
$SUBJECTS_DIR/CSRI001/surf/?h.pial_lgi --sum
h.aparc.pial_lgi-csri001.stats
*/
/*
On Wed, Sep 9, 2020 at 11:32 PM Douglas N. Greve
<dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> wrote:
You need to include the hemisphere in the --slabel
arguments (maybe the 2nd one)
On 9/9/2020 2:10 PM, vittal korann wrote:
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Dear Douglas
Thank you for your help!
I got an error while executing the mris_segstats command.
Command:
mri_segstats --slabel CSRI001?h
$SUBJECTS_DIR/CSRI001/label/?h.cortex.label --i
$SUBJECTS_DIR/CSRI001/surf/?h.pial_lgi --sum
h.aparc.pial_lgi-csri001.stats
ERROR: Option
/usr/local/freesurfer//subjects/CSRI001/surf/rh.pial_lgi
unknown
Please correct me if something wrong in the command line.
Sorry for troubling you again.
With regards
Vittal
*/
/*
On Wed, Sep 9, 2020 at 10:23 PM Douglas N. Greve
<dgr...@mgh.harvard.edu
<mailto:dgr...@mgh.harvard.edu>> wrote:
You can use mri_segstats with the --slabel option,
specifying the ?h.cortex.label and using the
gyrification as input
On 9/9/2020 12:54 PM, vittal korann wrote:
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Thank you so much, Douglas.
Could you please guide me to obtain the global
mean gyrification index for each subject?
With regards
korann
*/
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