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This command includes the excludeid = 0
mri_segstats --slabel subject_ID lh
$SUBJECTS_DIR/subject_ID/label/lh.cortex.label --i
$SUBJECTS_DIR/subject_ID/surf/lh.pial_lgi --excludeid 0 --sum
lh.aparc.pial_lgi_lh.stats
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Douglas N. Greve
Sent: Wednesday, September 09, 2020 12:13 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] mean gyrification index
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I think that should work
On 9/9/2020 12:59 PM, Alexopoulos, Dimitrios wrote:
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I have used this for mean GI per hemisphere:
mri_segstats --i lh.lgi.mgz --slabel subject lh
$SUBJECTS_DIR/subject/label/lh.cortex.label --excludeid 0 --o lh.lgi.sum
Jim
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu><mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
On Behalf Of Douglas N. Greve
Sent: Wednesday, September 09, 2020 11:54 AM
To: vittal korann <vittalkor...@gmail.com><mailto:vittalkor...@gmail.com>;
freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] mean gyrification index
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You can use mri_segstats with the --slabel option, specifying the
?h.cortex.label and using the gyrification as input
On 9/9/2020 12:54 PM, vittal korann wrote:
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Thank you so much, Douglas.
Could you please guide me to obtain the global mean gyrification index for each
subject?
With regards
korann
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