External Email - Use Caution I tried to put the subject folder in tar.xz format for ease, this is what I get:
ftp> put /home/gorkem/output/BE2.tar.xz local: /home/gorkem/output/BE2.tar.xz remote: /home/gorkem/output/BE2.tar.xz 200 PORT command successful. Consider using PASV. 553 Could not create file. Best, Batuhan On Tue, Nov 27, 2018 at 12:47 PM Batuhan Erkat <o.batuhaner...@gmail.com> wrote: > Hello Bram, > > I just followed the guideline at FTPFileExchange, put them to > transfer/incoming. > > Files I put are: > 001.mgz > rawavg.mgz > build-stamp.txt > recon-all-status.log > recon-all.cmd > recon-all.env > recon-all.error > recon-all.local-copy > recon-all.log > error.log > > I tried to create a folder, but of course I don't have permission. If you > can open a folder named Batuhan, or something like that, I can put them > there. Also, I tried and couldn't put my subject folder directly via > Filezilla or the terminal. > > Best, > Batuhan > > On Mon, Nov 26, 2018 at 10:23 PM Diamond, Bram Ryder < > brdiam...@mgh.harvard.edu> wrote: > >> Hi Batuhan, >> >> >> I'm trying to access the files now. What is the name of the >> files/directory you uploaded? I'm not sure they transferred. >> >> >> Thanks, >> >> Bram >> >> >> *Bram R. Diamond, BSc* >> Research Technician II >> Laboratory for Computational Neuroimaging >> Martinos Center for Biomedical Imaging >> Massachusetts General Hospital >> 149 13th Street >> Charlestown, MA 02129 >> (p): 617-726-6598 >> >> ------------------------------ >> *From:* freesurfer-boun...@nmr.mgh.harvard.edu < >> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Batuhan Erkat < >> o.batuhaner...@gmail.com> >> *Sent:* Wednesday, November 21, 2018 12:01:53 PM >> *To:* freesurfer@nmr.mgh.harvard.edu >> *Cc:* batuhan.er...@umram.bilkent.edu.tr; astev...@nmr.mgh.harvard.edu >> *Subject:* Re: [Freesurfer] Recon-all - mghRead could not read rawavg.mgz >> >> >> External Email - Use Caution >> >> Hi Bram, >> >> I uploaded all the files, including my input image and recon-all scripts. >> As you can see, there are no errors for mri_convert, but there is for >> mghRead(). If you inspect the 001.mgz and rawavg.mgz files, you'll realize >> that they are corrupted and probably that's why mghRead fails to read >> rawavg.mgz. >> >> Can you see the files, did I do the file transmission correctly? >> >> Best, >> Batuhan >> >> On Wed, Nov 21, 2018 at 7:32 PM Diamond, Bram Ryder < >> brdiam...@mgh.harvard.edu> wrote: >> >> Hi Batuhan, >> >> Can you please upload the BE2 subject data using our ftp file >> exchange and let me know the exact command and terminal output when you ran >> mri_convert? >> >> Info on our ftp file exchange: >> https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange >> >> Thanks, >> Bram >> >> >> *Bram R. Diamond, BSc* >> Research Technician II >> Laboratory for Computational Neuroimaging >> Martinos Center for Biomedical Imaging >> Massachusetts General Hospital >> 149 13th Street >> Charlestown, MA 02129 >> (p): 617-726-6598 >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> -- >> >> MSc Candidate >> >> Neuroscience Graduate Program >> National Magnetic Resonance Research Center (UMRAM) & >> Aysel Sabuncu Brain Research Center >> >> Bilkent University >> Ankara, 06800 >> Turkey >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > > MSc Candidate > > Neuroscience Graduate Program > National Magnetic Resonance Research Center (UMRAM) & > Aysel Sabuncu Brain Research Center > > Bilkent University > Ankara, 06800 > Turkey > > -- MSc Candidate Neuroscience Graduate Program National Magnetic Resonance Research Center (UMRAM) & Aysel Sabuncu Brain Research Center Bilkent University Ankara, 06800 Turkey
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