External Email - Use Caution Hello Bram,
I just followed the guideline at FTPFileExchange, put them to transfer/incoming. Files I put are: 001.mgz rawavg.mgz build-stamp.txt recon-all-status.log recon-all.cmd recon-all.env recon-all.error recon-all.local-copy recon-all.log error.log I tried to create a folder, but of course I don't have permission. If you can open a folder named Batuhan, or something like that, I can put them there. Also, I tried and couldn't put my subject folder directly via Filezilla or the terminal. Best, Batuhan On Mon, Nov 26, 2018 at 10:23 PM Diamond, Bram Ryder < brdiam...@mgh.harvard.edu> wrote: > Hi Batuhan, > > > I'm trying to access the files now. What is the name of the > files/directory you uploaded? I'm not sure they transferred. > > > Thanks, > > Bram > > > *Bram R. Diamond, BSc* > Research Technician II > Laboratory for Computational Neuroimaging > Martinos Center for Biomedical Imaging > Massachusetts General Hospital > 149 13th Street > Charlestown, MA 02129 > (p): 617-726-6598 > > ------------------------------ > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Batuhan Erkat < > o.batuhaner...@gmail.com> > *Sent:* Wednesday, November 21, 2018 12:01:53 PM > *To:* freesurfer@nmr.mgh.harvard.edu > *Cc:* batuhan.er...@umram.bilkent.edu.tr; astev...@nmr.mgh.harvard.edu > *Subject:* Re: [Freesurfer] Recon-all - mghRead could not read rawavg.mgz > > > External Email - Use Caution > > Hi Bram, > > I uploaded all the files, including my input image and recon-all scripts. > As you can see, there are no errors for mri_convert, but there is for > mghRead(). If you inspect the 001.mgz and rawavg.mgz files, you'll realize > that they are corrupted and probably that's why mghRead fails to read > rawavg.mgz. > > Can you see the files, did I do the file transmission correctly? > > Best, > Batuhan > > On Wed, Nov 21, 2018 at 7:32 PM Diamond, Bram Ryder < > brdiam...@mgh.harvard.edu> wrote: > > Hi Batuhan, > > Can you please upload the BE2 subject data using our ftp file exchange and > let me know the exact command and terminal output when you ran > mri_convert? > > Info on our ftp file exchange: > https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange > > Thanks, > Bram > > > *Bram R. Diamond, BSc* > Research Technician II > Laboratory for Computational Neuroimaging > Martinos Center for Biomedical Imaging > Massachusetts General Hospital > 149 13th Street > Charlestown, MA 02129 > (p): 617-726-6598 > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > > MSc Candidate > > Neuroscience Graduate Program > National Magnetic Resonance Research Center (UMRAM) & > Aysel Sabuncu Brain Research Center > > Bilkent University > Ankara, 06800 > Turkey > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- MSc Candidate Neuroscience Graduate Program National Magnetic Resonance Research Center (UMRAM) & Aysel Sabuncu Brain Research Center Bilkent University Ankara, 06800 Turkey
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