External Email - Use Caution Hi Bram,
I uploaded all the files, including my input image and recon-all scripts. As you can see, there are no errors for mri_convert, but there is for mghRead(). If you inspect the 001.mgz and rawavg.mgz files, you'll realize that they are corrupted and probably that's why mghRead fails to read rawavg.mgz. Can you see the files, did I do the file transmission correctly? Best, Batuhan On Wed, Nov 21, 2018 at 7:32 PM Diamond, Bram Ryder < brdiam...@mgh.harvard.edu> wrote: > Hi Batuhan, > > Can you please upload the BE2 subject data using our ftp file exchange and > let me know the exact command and terminal output when you ran > mri_convert? > > Info on our ftp file exchange: > https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange > > Thanks, > Bram > > > *Bram R. Diamond, BSc* > Research Technician II > Laboratory for Computational Neuroimaging > Martinos Center for Biomedical Imaging > Massachusetts General Hospital > 149 13th Street > Charlestown, MA 02129 > (p): 617-726-6598 > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- MSc Candidate Neuroscience Graduate Program National Magnetic Resonance Research Center (UMRAM) & Aysel Sabuncu Brain Research Center Bilkent University Ankara, 06800 Turkey
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