Hello Bruce,  

Thank you for the response. I meant the latter ( making maps etc). I want to do 
something similar to the subcortical volume based analysis on PETSurfer page 
however, on freesurfer T1. Freesurfer doesn't perform VBM hence, why should 
there be a problem with interpretation? 

Best, 
Miracle

Sent from my BlackBerry 10 smartphone.
  Original Message  
From: Bruce Fischl
Sent: Friday, October 13, 2017 6:53 PM
To: Freesurfer support list
Reply To: Freesurfer support list
Subject: Re: [Freesurfer] cortical/subcortical volume based analysis

Hi Paul

we typically do this type of analysis by looking at scatter plots of 
structure volumes (e.g. hippocampus). Alternatively, you can make maps, 
but that opens up all the problems/difficulties of interpretation of VBM. 
Which did you mean?
cheers
Bruce

On Fri, 13 Oct 2017, miracle ozzoude wrote:

> Hello FreeSurfer experts, 
> I want to perform a whole brain volume based group analysis for cortical and 
> subcortical regions.
> That's something very similar to surface based group analysis for cortical 
> thickness however, for
> volume. Is there a tutorial on how to do it? if yes, please can i get the 
> link. If not, please can
> someone direct me how to go about doing it? My goal is to perform a group 
> comparison between control
> and PD patients based on volume. Thank you very much. 
> 
> Best, 
> Paul 
> 
>

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